Clostridium phage phiCT19406C

Taxonomy: Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; unclassified Siphoviridae

Average proteome isoelectric point is 6.73

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 63 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A0A7RWJ1|A0A0A7RWJ1_9CAUD Uncharacterized protein OS=Clostridium phage phiCT19406C OX=1567011 GN=phiCT19406C_14 PE=4 SV=1
MM1 pKa = 8.11DD2 pKa = 5.74NLPDD6 pKa = 3.55CQYY9 pKa = 10.57EE10 pKa = 4.18YY11 pKa = 10.99GYY13 pKa = 9.44EE14 pKa = 3.95APIMQIAEE22 pKa = 3.98EE23 pKa = 4.25CSICGHH29 pKa = 6.68EE30 pKa = 4.3IYY32 pKa = 10.72EE33 pKa = 4.21GDD35 pKa = 3.71EE36 pKa = 4.32YY37 pKa = 11.88YY38 pKa = 10.81HH39 pKa = 6.98IDD41 pKa = 3.54NLKK44 pKa = 9.86ICEE47 pKa = 3.97DD48 pKa = 4.59CILDD52 pKa = 3.72FKK54 pKa = 11.29KK55 pKa = 10.4IGEE58 pKa = 4.07II59 pKa = 3.91

Molecular weight: 6.93 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A0A7S142|A0A0A7S142_9CAUD Uncharacterized protein OS=Clostridium phage phiCT19406C OX=1567011 GN=phiCT19406C_28 PE=4 SV=1
MM1 pKa = 7.41CRR3 pKa = 11.84VDD5 pKa = 3.98MLLDD9 pKa = 3.6KK10 pKa = 10.56ALKK13 pKa = 9.95RR14 pKa = 11.84IRR16 pKa = 11.84VNLRR20 pKa = 11.84KK21 pKa = 9.52EE22 pKa = 4.0FKK24 pKa = 10.18YY25 pKa = 10.4KK26 pKa = 10.14KK27 pKa = 9.94RR28 pKa = 11.84CINRR32 pKa = 11.84NKK34 pKa = 10.31LYY36 pKa = 10.52KK37 pKa = 10.07KK38 pKa = 10.1RR39 pKa = 11.84IKK41 pKa = 10.11QGRR44 pKa = 11.84KK45 pKa = 9.63GII47 pKa = 4.02

Molecular weight: 5.85 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

63

0

63

10835

43

1148

172.0

19.8

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

5.095 ± 0.469

1.191 ± 0.171

5.639 ± 0.279

9.599 ± 0.334

3.396 ± 0.24

5.381 ± 0.277

1.108 ± 0.128

8.15 ± 0.417

11.371 ± 0.384

8.519 ± 0.361

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.806 ± 0.188

7.208 ± 0.269

1.957 ± 0.148

3.036 ± 0.209

3.95 ± 0.268

5.371 ± 0.308

5.565 ± 0.344

5.482 ± 0.218

0.978 ± 0.102

4.199 ± 0.268
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski