Kingella denitrificans ATCC 33394

Taxonomy: cellular organisms; Bacteria; Proteobacteria; Betaproteobacteria; Neisseriales; Neisseriaceae; Kingella; Kingella denitrificans

Average proteome isoelectric point is 6.99

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 2517 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|F0EZJ3|F0EZJ3_9NEIS Pyridoxine/pyridoxamine 5'-phosphate oxidase OS=Kingella denitrificans ATCC 33394 OX=888741 GN=pdxH PE=3 SV=1
MM1 pKa = 7.36YY2 pKa = 9.36EE3 pKa = 3.83VNRR6 pKa = 11.84SVFIVIPRR14 pKa = 11.84EE15 pKa = 3.98PFWYY19 pKa = 9.04WLNEE23 pKa = 4.07LPDD26 pKa = 4.09SDD28 pKa = 5.66LGGLNLIDD36 pKa = 4.27LQEE39 pKa = 4.57DD40 pKa = 3.73ANSYY44 pKa = 10.72LVDD47 pKa = 3.42ACEE50 pKa = 4.33NADD53 pKa = 4.08EE54 pKa = 4.38LWDD57 pKa = 4.19IIEE60 pKa = 4.29EE61 pKa = 4.09RR62 pKa = 11.84VEE64 pKa = 4.15EE65 pKa = 4.1IFAAEE70 pKa = 3.9LADD73 pKa = 3.33WCADD77 pKa = 3.45EE78 pKa = 4.68THH80 pKa = 6.52WPDD83 pKa = 2.98LHH85 pKa = 8.76LDD87 pKa = 3.88IFRR90 pKa = 11.84EE91 pKa = 4.06WFDD94 pKa = 3.78VEE96 pKa = 4.19LSSIVTDD103 pKa = 4.55LSSEE107 pKa = 3.98PLQRR111 pKa = 11.84EE112 pKa = 4.32SFQEE116 pKa = 4.34IYY118 pKa = 10.79CC119 pKa = 4.3

Molecular weight: 14.11 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|F0F1F6|F0F1F6_9NEIS Uncharacterized protein OS=Kingella denitrificans ATCC 33394 OX=888741 GN=HMPREF9098_1941 PE=4 SV=1
MM1 pKa = 7.35KK2 pKa = 9.36RR3 pKa = 11.84TYY5 pKa = 10.14QPSVTKK11 pKa = 10.56RR12 pKa = 11.84KK13 pKa = 7.91RR14 pKa = 11.84THH16 pKa = 5.89GFLVRR21 pKa = 11.84SKK23 pKa = 9.38TRR25 pKa = 11.84GGRR28 pKa = 11.84AVLAARR34 pKa = 11.84RR35 pKa = 11.84AKK37 pKa = 9.87GRR39 pKa = 11.84KK40 pKa = 8.75RR41 pKa = 11.84LAVV44 pKa = 3.41

Molecular weight: 5.05 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

2517

0

2517

656618

39

1937

260.9

28.94

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

10.828 ± 0.081

1.208 ± 0.02

5.025 ± 0.032

5.726 ± 0.057

4.138 ± 0.038

7.006 ± 0.054

2.525 ± 0.028

5.549 ± 0.041

4.808 ± 0.045

10.134 ± 0.062

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.577 ± 0.026

3.935 ± 0.044

4.499 ± 0.036

4.999 ± 0.048

5.675 ± 0.049

5.368 ± 0.038

5.06 ± 0.037

6.561 ± 0.041

1.389 ± 0.024

2.991 ± 0.029
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski