Bacteroides nordii CL02T12C05

Taxonomy: cellular organisms; Bacteria; FCB group; Bacteroidetes/Chlorobi group; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides; Bacteroides nordii

Average proteome isoelectric point is 6.42

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 4388 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|I8XQ29|I8XQ29_9BACE Uncharacterized protein OS=Bacteroides nordii CL02T12C05 OX=997884 GN=HMPREF1068_01724 PE=4 SV=1
MM1 pKa = 7.52IKK3 pKa = 10.02IKK5 pKa = 10.61FSILAVMLMTAFFSFSSCSDD25 pKa = 3.54DD26 pKa = 4.55DD27 pKa = 4.33DD28 pKa = 4.61TYY30 pKa = 11.66LPPNQAIISALNQLYY45 pKa = 10.09PGVKK49 pKa = 9.89NIEE52 pKa = 3.96WEE54 pKa = 4.3QKK56 pKa = 8.89GVYY59 pKa = 9.22YY60 pKa = 10.84VADD63 pKa = 3.47CWVGNDD69 pKa = 4.34EE70 pKa = 4.95LDD72 pKa = 3.28VWFDD76 pKa = 4.38ANANWIMTEE85 pKa = 3.45MDD87 pKa = 3.61IFFEE91 pKa = 4.07NLPTAVSTAYY101 pKa = 10.43QEE103 pKa = 4.39GNYY106 pKa = 9.83ANWVIDD112 pKa = 4.66DD113 pKa = 4.02LTKK116 pKa = 10.36LTFPQKK122 pKa = 9.66PEE124 pKa = 3.73EE125 pKa = 4.13FVFEE129 pKa = 4.28VQQGGQEE136 pKa = 3.7RR137 pKa = 11.84ALYY140 pKa = 8.34YY141 pKa = 10.25SEE143 pKa = 4.78YY144 pKa = 11.09GGLLRR149 pKa = 11.84EE150 pKa = 4.46KK151 pKa = 10.54DD152 pKa = 3.63ISDD155 pKa = 3.64TDD157 pKa = 3.5NTHH160 pKa = 6.28WPDD163 pKa = 2.91ISS165 pKa = 3.38

Molecular weight: 19.02 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|I9GJ01|I9GJ01_9BACE Uncharacterized protein OS=Bacteroides nordii CL02T12C05 OX=997884 GN=HMPREF1068_03477 PE=4 SV=1
MM1 pKa = 8.15IIMVRR6 pKa = 11.84YY7 pKa = 9.79HH8 pKa = 6.92NYY10 pKa = 7.11QLKK13 pKa = 8.44WRR15 pKa = 11.84KK16 pKa = 9.56EE17 pKa = 3.69GMLLIRR23 pKa = 11.84TFTFVIRR30 pKa = 11.84CC31 pKa = 3.61

Molecular weight: 3.96 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

4388

0

4388

1679095

23

2463

382.7

43.2

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

6.763 ± 0.042

1.215 ± 0.015

5.479 ± 0.021

6.523 ± 0.036

4.579 ± 0.021

6.84 ± 0.031

1.79 ± 0.015

7.117 ± 0.032

6.655 ± 0.032

9.013 ± 0.039

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.651 ± 0.016

5.365 ± 0.035

3.724 ± 0.019

3.384 ± 0.016

4.463 ± 0.026

6.279 ± 0.034

5.82 ± 0.029

6.445 ± 0.03

1.279 ± 0.013

4.615 ± 0.027
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski