Alstroemeria virus X

Taxonomy: Viruses; Riboviria; Orthornavirae; Kitrinoviricota; Alsuviricetes; Tymovirales; Alphaflexiviridae; Potexvirus

Average proteome isoelectric point is 6.66

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 5 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|Q3V6G7|Q3V6G7_9VIRU ORF1 protein OS=Alstroemeria virus X OX=316983 PE=4 SV=1
MM1 pKa = 7.64ALFYY5 pKa = 11.0LQTLLLNSDD14 pKa = 4.57FTRR17 pKa = 11.84TTTPTASPLIIFGTAGCGKK36 pKa = 8.9TSIIRR41 pKa = 11.84ALASQFPEE49 pKa = 3.7LHH51 pKa = 6.33FSSFHH56 pKa = 6.87PIVLLPNIRR65 pKa = 11.84KK66 pKa = 8.71KK67 pKa = 10.19QHH69 pKa = 5.97LANPNEE75 pKa = 4.16ATDD78 pKa = 3.66VLDD81 pKa = 4.47EE82 pKa = 4.71FLAGPNPEE90 pKa = 3.49VRR92 pKa = 11.84IAKK95 pKa = 9.94FCDD98 pKa = 3.2PLQYY102 pKa = 10.87NCEE105 pKa = 4.31TLPEE109 pKa = 3.94PHH111 pKa = 7.03FISEE115 pKa = 4.03TTYY118 pKa = 10.06RR119 pKa = 11.84FCPRR123 pKa = 11.84TCEE126 pKa = 3.95LLNDD130 pKa = 3.79IFKK133 pKa = 8.39TTLKK137 pKa = 10.78SKK139 pKa = 10.5VLEE142 pKa = 4.19ICKK145 pKa = 9.52VACVDD150 pKa = 4.47PYY152 pKa = 11.71AVDD155 pKa = 3.45PVGKK159 pKa = 10.33VIAIEE164 pKa = 4.06QEE166 pKa = 4.01LFPILSAHH174 pKa = 6.47GLTVHH179 pKa = 6.64SPDD182 pKa = 3.81FLTGQTIPEE191 pKa = 4.07VSVYY195 pKa = 9.69TLNLKK200 pKa = 10.24RR201 pKa = 11.84AVAEE205 pKa = 4.23HH206 pKa = 6.27PHH208 pKa = 7.14LLFIALTRR216 pKa = 11.84HH217 pKa = 5.82SKK219 pKa = 8.82TLHH222 pKa = 6.62LFDD225 pKa = 6.16LNAGPDD231 pKa = 3.5TTAA234 pKa = 3.97

Molecular weight: 26.0 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|Q3V6G6|Q3V6G6_9VIRU Triple gene block protein 1 OS=Alstroemeria virus X OX=316983 PE=4 SV=1
MM1 pKa = 7.83PGLTPPPNYY10 pKa = 10.02EE11 pKa = 3.74NVYY14 pKa = 10.76KK15 pKa = 10.71LVALGFICVGIILATKK31 pKa = 10.14SNHH34 pKa = 4.55NHH36 pKa = 5.6HH37 pKa = 6.96TGDD40 pKa = 3.72QQHH43 pKa = 6.38SLPFGGIYY51 pKa = 9.64RR52 pKa = 11.84DD53 pKa = 3.6GTKK56 pKa = 9.12TVSYY60 pKa = 9.19FRR62 pKa = 11.84PSDD65 pKa = 4.67PITHH69 pKa = 5.83SNKK72 pKa = 8.66WLAFSSVITISLIIWLCSKK91 pKa = 9.82FSPGDD96 pKa = 3.55RR97 pKa = 11.84RR98 pKa = 11.84PLPPVCSHH106 pKa = 6.29CTSHH110 pKa = 7.22

Molecular weight: 12.19 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

5

0

5

2319

99

1646

463.8

51.95

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

8.107 ± 1.344

1.682 ± 0.389

5.175 ± 0.648

5.175 ± 0.73

4.873 ± 0.304

4.312 ± 0.713

3.493 ± 0.65

5.218 ± 0.448

5.908 ± 0.957

8.969 ± 1.035

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.156 ± 0.465

4.873 ± 0.23

7.288 ± 0.668

4.269 ± 0.856

4.01 ± 0.316

6.684 ± 0.795

8.064 ± 0.372

5.52 ± 0.266

1.035 ± 0.212

3.191 ± 0.384
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski