Pseudomonas phage tabernarius

Taxonomy: Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Myoviridae; Tabernariusvirus; Pseudomonas virus tabernarius

Average proteome isoelectric point is 6.32

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 89 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A2H4P7B8|A0A2H4P7B8_9CAUD Uncharacterized protein OS=Pseudomonas phage tabernarius OX=2048978 GN=CNR33_00084 PE=4 SV=1
MM1 pKa = 7.39SNAYY5 pKa = 9.72NADD8 pKa = 2.89GRR10 pKa = 11.84EE11 pKa = 3.81PSEE14 pKa = 4.91DD15 pKa = 3.6YY16 pKa = 10.5IKK18 pKa = 11.51AMMYY22 pKa = 10.23VIEE25 pKa = 4.38EE26 pKa = 4.38HH27 pKa = 5.66TTDD30 pKa = 4.49LSGQEE35 pKa = 4.49IYY37 pKa = 10.68DD38 pKa = 3.58ITHH41 pKa = 5.95TLIMSGFYY49 pKa = 10.08TGIEE53 pKa = 3.81RR54 pKa = 11.84HH55 pKa = 5.14QLEE58 pKa = 4.32GHH60 pKa = 6.78LVPEE64 pKa = 4.8GSVEE68 pKa = 4.07KK69 pKa = 10.95LRR71 pKa = 11.84GTVNSYY77 pKa = 10.41PPRR80 pKa = 11.84EE81 pKa = 4.02PVLKK85 pKa = 10.06TEE87 pKa = 4.13NQYY90 pKa = 10.86EE91 pKa = 4.18LEE93 pKa = 4.17LTKK96 pKa = 10.7EE97 pKa = 3.95LGGAIDD103 pKa = 4.48GPFSEE108 pKa = 5.19ALEE111 pKa = 4.17NAKK114 pKa = 10.42KK115 pKa = 9.74EE116 pKa = 4.12ASEE119 pKa = 4.24VEE121 pKa = 3.84PDD123 pKa = 3.56LAAGRR128 pKa = 11.84ASYY131 pKa = 7.96GTSEE135 pKa = 4.56CTCDD139 pKa = 3.64QCTPYY144 pKa = 10.96NWDD147 pKa = 3.08

Molecular weight: 16.39 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A2H4P6P8|A0A2H4P6P8_9CAUD Uncharacterized protein OS=Pseudomonas phage tabernarius OX=2048978 GN=CNR33_00009 PE=4 SV=1
MM1 pKa = 7.22KK2 pKa = 10.51QPTFPANEE10 pKa = 4.19LDD12 pKa = 4.23CLFLLAVMLMSHH24 pKa = 6.95RR25 pKa = 11.84NNPAKK30 pKa = 10.21LRR32 pKa = 11.84HH33 pKa = 4.59VAKK36 pKa = 10.38LQVKK40 pKa = 8.61NVPRR44 pKa = 11.84STRR47 pKa = 11.84PAFAMIALSKK57 pKa = 10.96NPAAVIQSAIEE68 pKa = 3.95NFF70 pKa = 3.56

Molecular weight: 7.8 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

89

0

89

20365

44

1014

228.8

25.21

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

9.718 ± 0.324

1.036 ± 0.107

5.991 ± 0.225

6.118 ± 0.421

4.297 ± 0.182

7.596 ± 0.373

1.836 ± 0.171

5.166 ± 0.186

5.838 ± 0.408

7.508 ± 0.206

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.877 ± 0.145

4.719 ± 0.301

4.346 ± 0.19

3.82 ± 0.204

4.866 ± 0.26

6.752 ± 0.329

5.922 ± 0.251

7.258 ± 0.248

1.326 ± 0.101

3.01 ± 0.148
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski