Myoviridae sp. ctThM1

Taxonomy: Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Myoviridae; unclassified Myoviridae

Average proteome isoelectric point is 6.04

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 156 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A5Q2W8L4|A0A5Q2W8L4_9CAUD Uncharacterized protein OS=Myoviridae sp. ctThM1 OX=2656730 PE=4 SV=1
MM1 pKa = 7.26MSNIKK6 pKa = 9.84QLLKK10 pKa = 10.6QYY12 pKa = 10.7EE13 pKa = 4.34EE14 pKa = 4.51VNAEE18 pKa = 4.04LNKK21 pKa = 10.18QIKK24 pKa = 10.37DD25 pKa = 3.27NGEE28 pKa = 3.74AFIQEE33 pKa = 4.62LFQDD37 pKa = 3.83VFDD40 pKa = 3.88NHH42 pKa = 6.47QGLNVIGVVGWTMGFNDD59 pKa = 5.3GEE61 pKa = 4.37ACYY64 pKa = 9.06HH65 pKa = 4.79QQYY68 pKa = 10.29IYY70 pKa = 10.63TGVPAWKK77 pKa = 9.71DD78 pKa = 3.38YY79 pKa = 10.96PDD81 pKa = 4.2FYY83 pKa = 11.29EE84 pKa = 4.04EE85 pKa = 4.15SGNFEE90 pKa = 4.04EE91 pKa = 6.08DD92 pKa = 3.55FEE94 pKa = 5.23FDD96 pKa = 3.48EE97 pKa = 5.51EE98 pKa = 4.49EE99 pKa = 4.16NKK101 pKa = 10.47HH102 pKa = 6.35LNSEE106 pKa = 4.34CSTLQQAKK114 pKa = 9.86AQVEE118 pKa = 4.41AYY120 pKa = 10.42DD121 pKa = 4.2EE122 pKa = 4.5IIEE125 pKa = 4.44RR126 pKa = 11.84VFGTNFRR133 pKa = 11.84IVATRR138 pKa = 11.84NEE140 pKa = 4.54DD141 pKa = 2.99NTAAVSVDD149 pKa = 3.88EE150 pKa = 4.49YY151 pKa = 11.37DD152 pKa = 3.56CGYY155 pKa = 11.34

Molecular weight: 17.97 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A5Q2W386|A0A5Q2W386_9CAUD Uncharacterized protein OS=Myoviridae sp. ctThM1 OX=2656730 PE=4 SV=1
MM1 pKa = 7.7ANILPILVVLPYY13 pKa = 10.08VVSTIRR19 pKa = 11.84YY20 pKa = 7.29RR21 pKa = 11.84SRR23 pKa = 11.84SKK25 pKa = 10.55IQVFQCFFKK34 pKa = 11.26LFDD37 pKa = 3.88TNKK40 pKa = 9.95LRR42 pKa = 11.84VFQLPITRR50 pKa = 11.84FASKK54 pKa = 9.33TLLFLSRR61 pKa = 11.84NNCAIFVTIFATMAQTAMFCVYY83 pKa = 10.0IFHH86 pKa = 7.48LLPLKK91 pKa = 10.32IYY93 pKa = 10.12PKK95 pKa = 10.75

Molecular weight: 11.14 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

156

0

156

24069

50

934

154.3

17.56

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

6.498 ± 0.255

1.695 ± 0.15

6.012 ± 0.22

7.728 ± 0.266

4.429 ± 0.143

6.332 ± 0.223

1.762 ± 0.132

6.099 ± 0.172

7.449 ± 0.266

8.027 ± 0.174

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.46 ± 0.111

5.019 ± 0.145

3.207 ± 0.117

3.822 ± 0.169

4.404 ± 0.193

6.502 ± 0.186

5.65 ± 0.221

6.726 ± 0.179

1.6 ± 0.106

4.579 ± 0.16
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski