Gordonia phage Schnabeltier

Taxonomy: Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Schnabeltiervirus; Gordonia virus Schnabeltier

Average proteome isoelectric point is 6.31

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 71 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A142KA17|A0A142KA17_9CAUD Uncharacterized protein OS=Gordonia phage Schnabeltier OX=1821561 GN=29 PE=4 SV=1
MM1 pKa = 6.78TTPPPTFTLPEE12 pKa = 4.26YY13 pKa = 10.33PGVTYY18 pKa = 9.85TVLTGSGGVPGLPSNAVRR36 pKa = 11.84IVGTVVNPWHH46 pKa = 6.14EE47 pKa = 3.88PEE49 pKa = 4.27YY50 pKa = 11.2NYY52 pKa = 11.36GLDD55 pKa = 3.51PNGYY59 pKa = 7.8TEE61 pKa = 5.28VTDD64 pKa = 3.13PWKK67 pKa = 10.71RR68 pKa = 11.84HH69 pKa = 4.33TEE71 pKa = 4.27LIEE74 pKa = 3.91VTNTGFLAPTAPVPTEE90 pKa = 4.34PPPSPPAPTPDD101 pKa = 3.85PEE103 pKa = 4.27PTPEE107 pKa = 3.9EE108 pKa = 4.23VV109 pKa = 3.16

Molecular weight: 11.66 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A142KA40|A0A142KA40_9CAUD Uncharacterized protein OS=Gordonia phage Schnabeltier OX=1821561 GN=52 PE=4 SV=1
MM1 pKa = 7.19ARR3 pKa = 11.84IRR5 pKa = 11.84ARR7 pKa = 11.84LTALLIAAVAAATLSACDD25 pKa = 3.38TDD27 pKa = 5.81GYY29 pKa = 9.2TEE31 pKa = 4.03PVSNEE36 pKa = 3.72VCVDD40 pKa = 3.2RR41 pKa = 11.84SDD43 pKa = 5.57RR44 pKa = 11.84RR45 pKa = 11.84AQDD48 pKa = 3.6HH49 pKa = 5.73YY50 pKa = 11.18CEE52 pKa = 4.64SGFPNYY58 pKa = 9.48HH59 pKa = 4.86WWYY62 pKa = 9.77LPAGTYY68 pKa = 10.33VGIGQHH74 pKa = 4.81VTGGTNLRR82 pKa = 11.84PNRR85 pKa = 11.84VRR87 pKa = 11.84RR88 pKa = 11.84APTVTVTKK96 pKa = 9.32KK97 pKa = 5.53TTPRR101 pKa = 11.84TTAATPRR108 pKa = 11.84KK109 pKa = 7.56PTTKK113 pKa = 9.51STTTKK118 pKa = 9.59TRR120 pKa = 11.84TRR122 pKa = 11.84TTRR125 pKa = 2.97

Molecular weight: 13.81 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

71

0

71

15240

43

1704

214.6

23.27

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

12.579 ± 0.515

0.866 ± 0.134

6.424 ± 0.309

5.61 ± 0.346

2.71 ± 0.208

8.484 ± 0.427

1.995 ± 0.171

4.469 ± 0.247

2.946 ± 0.188

7.992 ± 0.288

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.211 ± 0.162

2.749 ± 0.189

6.24 ± 0.319

3.412 ± 0.175

7.598 ± 0.361

5.781 ± 0.192

6.358 ± 0.26

7.434 ± 0.295

2.152 ± 0.146

1.988 ± 0.183
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski