Aminomonas paucivorans DSM 12260

Taxonomy: cellular organisms; Bacteria; Synergistetes; Synergistia; Synergistales; Synergistaceae; Aminomonas; Aminomonas paucivorans

Average proteome isoelectric point is 6.59

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 2391 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|E3CYW7|E3CYW7_9BACT Transcriptional regulator AraC family OS=Aminomonas paucivorans DSM 12260 OX=584708 GN=Apau_2151 PE=4 SV=1
MM1 pKa = 7.72AARR4 pKa = 11.84EE5 pKa = 4.02KK6 pKa = 10.37IAYY9 pKa = 9.46LKK11 pKa = 11.04GLIDD15 pKa = 3.91GQKK18 pKa = 10.25PADD21 pKa = 4.19PDD23 pKa = 3.81TAKK26 pKa = 11.15LLGAVVDD33 pKa = 4.62ALDD36 pKa = 4.15GLADD40 pKa = 4.01DD41 pKa = 5.84LEE43 pKa = 4.65NQGIRR48 pKa = 11.84LEE50 pKa = 4.11EE51 pKa = 3.86HH52 pKa = 6.9RR53 pKa = 11.84EE54 pKa = 3.77ILDD57 pKa = 3.65EE58 pKa = 4.1VSEE61 pKa = 4.18YY62 pKa = 11.04LDD64 pKa = 4.79QIDD67 pKa = 4.58EE68 pKa = 4.41DD69 pKa = 4.26LCALEE74 pKa = 5.93DD75 pKa = 4.59RR76 pKa = 11.84IEE78 pKa = 4.2SCEE81 pKa = 4.0DD82 pKa = 3.22EE83 pKa = 4.89EE84 pKa = 4.37EE85 pKa = 5.56GEE87 pKa = 4.92DD88 pKa = 4.27EE89 pKa = 4.33EE90 pKa = 4.58EE91 pKa = 5.15DD92 pKa = 4.25YY93 pKa = 11.32ISVCCPHH100 pKa = 6.45CRR102 pKa = 11.84KK103 pKa = 10.49DD104 pKa = 3.6FFYY107 pKa = 11.1DD108 pKa = 3.37PTAYY112 pKa = 10.08EE113 pKa = 3.91EE114 pKa = 5.91DD115 pKa = 3.94EE116 pKa = 5.6DD117 pKa = 5.29LLCPHH122 pKa = 7.02CGEE125 pKa = 4.75PFKK128 pKa = 11.05QPEE131 pKa = 3.85II132 pKa = 4.05

Molecular weight: 15.01 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|E3D143|E3D143_9BACT Asparaginase/glutaminase OS=Aminomonas paucivorans DSM 12260 OX=584708 GN=Apau_1530 PE=4 SV=1
MM1 pKa = 7.82IKK3 pKa = 10.17PQGARR8 pKa = 11.84AALLLPLLPLTLFLLSFTLGRR29 pKa = 11.84YY30 pKa = 7.68PIPLPTVLKK39 pKa = 10.42ILAAKK44 pKa = 8.06FFPLTPHH51 pKa = 6.62WPDD54 pKa = 2.92TMEE57 pKa = 4.06TVLWNLRR64 pKa = 11.84LPRR67 pKa = 11.84ALGAMMVGAALSSSGCAFQGLFRR90 pKa = 11.84NPLVSPYY97 pKa = 10.68VLGVAAGSGFGACLAILFTEE117 pKa = 4.48TRR119 pKa = 11.84WIVQLSATLFGMVAVLGATGLSGIYY144 pKa = 9.75RR145 pKa = 11.84KK146 pKa = 10.24ASTLVLVLGGIIVGSFFSALISLLKK171 pKa = 10.37FQADD175 pKa = 4.07PYY177 pKa = 9.63EE178 pKa = 4.51KK179 pKa = 10.38LPAMVFWLMGSLARR193 pKa = 11.84VSLTNLLAVAPMMAVGLGVLLALRR217 pKa = 11.84WRR219 pKa = 11.84LNLLAFGEE227 pKa = 4.43QEE229 pKa = 4.06AQALGAEE236 pKa = 4.76VVRR239 pKa = 11.84EE240 pKa = 3.71RR241 pKa = 11.84WLVILACTLLTSSAVCLAGVIGWVGLVIPHH271 pKa = 7.27IGRR274 pKa = 11.84LLVGPDD280 pKa = 2.97IRR282 pKa = 11.84RR283 pKa = 11.84LLPASISLGSFYY295 pKa = 11.21LLLVDD300 pKa = 3.94TLSRR304 pKa = 11.84TLSASEE310 pKa = 4.04IPLGILTALIGAPFFAWLLSRR331 pKa = 11.84NRR333 pKa = 11.84VAWRR337 pKa = 3.38

Molecular weight: 36.12 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

2391

0

2391

794651

31

1932

332.4

36.35

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

10.178 ± 0.052

1.281 ± 0.019

5.015 ± 0.036

7.231 ± 0.055

3.627 ± 0.031

9.623 ± 0.048

1.841 ± 0.021

3.427 ± 0.038

3.028 ± 0.043

12.444 ± 0.072

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

1.975 ± 0.02

1.996 ± 0.029

5.675 ± 0.042

2.883 ± 0.029

8.492 ± 0.061

5.13 ± 0.03

4.623 ± 0.031

8.049 ± 0.044

1.392 ± 0.019

2.089 ± 0.024
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski