Wenxinia marina DSM 24838

Taxonomy: cellular organisms; Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Roseobacteraceae; Wenxinia; Wenxinia marina

Average proteome isoelectric point is 6.17

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 4030 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A0D0Q8B7|A0A0D0Q8B7_9RHOB Mg chelatase-related protein OS=Wenxinia marina DSM 24838 OX=1123501 GN=Wenmar_01022 PE=3 SV=1
MM1 pKa = 7.2TADD4 pKa = 3.67NNTDD8 pKa = 3.35GEE10 pKa = 4.32IHH12 pKa = 6.51MKK14 pKa = 10.46RR15 pKa = 11.84LLLSSAALLLPAGTALADD33 pKa = 3.88FSMTILHH40 pKa = 6.41TNDD43 pKa = 2.48FHH45 pKa = 8.99DD46 pKa = 3.87RR47 pKa = 11.84FEE49 pKa = 5.48PISAFDD55 pKa = 3.7STCDD59 pKa = 3.71AEE61 pKa = 4.37TNAAGEE67 pKa = 4.58CFGGTARR74 pKa = 11.84LVTAIEE80 pKa = 3.75QARR83 pKa = 11.84AEE85 pKa = 4.18NEE87 pKa = 3.7NTILVDD93 pKa = 5.05GGDD96 pKa = 3.59QFQGTLFYY104 pKa = 10.03TYY106 pKa = 10.75YY107 pKa = 9.55KK108 pKa = 11.14GSMTAEE114 pKa = 4.31FMNQLGYY121 pKa = 10.99DD122 pKa = 3.29AMTVGNHH129 pKa = 5.62EE130 pKa = 4.45FDD132 pKa = 5.23DD133 pKa = 5.09GPEE136 pKa = 3.95VLRR139 pKa = 11.84EE140 pKa = 3.92FVDD143 pKa = 3.92TVEE146 pKa = 5.11FPILMSNADD155 pKa = 3.52VSGEE159 pKa = 4.03PLLADD164 pKa = 5.56AIMKK168 pKa = 7.98STTIEE173 pKa = 4.04VGGEE177 pKa = 4.12TIGLIGLTPQDD188 pKa = 3.73TDD190 pKa = 3.46EE191 pKa = 4.75LASPGPNVIFTDD203 pKa = 3.99PSDD206 pKa = 3.63AVQAEE211 pKa = 4.12VDD213 pKa = 3.57ALTEE217 pKa = 4.16AGVNKK222 pKa = 9.98IVVLSHH228 pKa = 6.42SGYY231 pKa = 11.36GLDD234 pKa = 3.37QTVAEE239 pKa = 4.49NTTGVDD245 pKa = 3.88VIVGGHH251 pKa = 5.65TNTLLGDD258 pKa = 3.52MEE260 pKa = 4.8GAQGAYY266 pKa = 7.34PTMVGDD272 pKa = 3.75TAIVQAYY279 pKa = 10.11AYY281 pKa = 9.78GKK283 pKa = 9.11YY284 pKa = 10.4LGMLDD289 pKa = 3.66VTFDD293 pKa = 3.72DD294 pKa = 4.99DD295 pKa = 4.71GNIIEE300 pKa = 5.6ASGQPLLIDD309 pKa = 3.91ASVEE313 pKa = 4.1EE314 pKa = 4.26NQGVLDD320 pKa = 4.6QIAEE324 pKa = 4.2YY325 pKa = 10.23AAPLDD330 pKa = 4.23EE331 pKa = 4.61IRR333 pKa = 11.84NEE335 pKa = 4.23VVAEE339 pKa = 3.89TSEE342 pKa = 4.67AIEE345 pKa = 4.34GNRR348 pKa = 11.84DD349 pKa = 2.33ICRR352 pKa = 11.84AMEE355 pKa = 4.17CSMGNLVADD364 pKa = 4.1AMLDD368 pKa = 3.4RR369 pKa = 11.84VADD372 pKa = 3.5QGIDD376 pKa = 3.43VAIANSGGLRR386 pKa = 11.84ASIDD390 pKa = 3.41AGEE393 pKa = 4.19VTMGEE398 pKa = 4.52VLTVLPFQNTLSTFQITGAQLMEE421 pKa = 4.32ALEE424 pKa = 4.5NGVSQVEE431 pKa = 4.34EE432 pKa = 4.13GAGRR436 pKa = 11.84FPQIAGMTFTADD448 pKa = 3.74LSQEE452 pKa = 3.9PGSRR456 pKa = 11.84ITEE459 pKa = 4.02VTVGGEE465 pKa = 4.02PLDD468 pKa = 4.17PEE470 pKa = 4.19ATYY473 pKa = 10.78GAVSNNYY480 pKa = 8.3VRR482 pKa = 11.84NGGDD486 pKa = 3.63GYY488 pKa = 11.6SMFVNAEE495 pKa = 3.72NAYY498 pKa = 10.81DD499 pKa = 4.41FGPDD503 pKa = 3.4LADD506 pKa = 3.24VTAEE510 pKa = 3.85YY511 pKa = 10.49LAANGPYY518 pKa = 9.49TPYY521 pKa = 9.58TDD523 pKa = 3.45GRR525 pKa = 11.84ITIEE529 pKa = 3.86NAPAAEE535 pKa = 4.02

Molecular weight: 56.53 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A0D0Q484|A0A0D0Q484_9RHOB GTPase Der OS=Wenxinia marina DSM 24838 OX=1123501 GN=der PE=3 SV=1
MM1 pKa = 7.69SKK3 pKa = 9.01RR4 pKa = 11.84TFQPSNRR11 pKa = 11.84VRR13 pKa = 11.84KK14 pKa = 9.2ARR16 pKa = 11.84HH17 pKa = 4.71GFRR20 pKa = 11.84ARR22 pKa = 11.84MATKK26 pKa = 10.43GGRR29 pKa = 11.84KK30 pKa = 8.99VLNARR35 pKa = 11.84RR36 pKa = 11.84ARR38 pKa = 11.84GRR40 pKa = 11.84KK41 pKa = 9.03RR42 pKa = 11.84LSAA45 pKa = 4.03

Molecular weight: 5.22 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

4030

0

4030

1236898

24

7873

306.9

33.05

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

13.692 ± 0.06

0.808 ± 0.012

6.179 ± 0.044

6.101 ± 0.037

3.422 ± 0.027

9.382 ± 0.044

1.918 ± 0.02

4.508 ± 0.029

2.064 ± 0.033

10.178 ± 0.054

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.494 ± 0.02

2.047 ± 0.022

5.604 ± 0.038

2.65 ± 0.02

7.781 ± 0.049

4.575 ± 0.032

5.413 ± 0.032

7.591 ± 0.036

1.534 ± 0.019

2.056 ± 0.018
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski