Cassava common mosaic virus

Taxonomy: Viruses; Riboviria; Orthornavirae; Kitrinoviricota; Alsuviricetes; Tymovirales; Alphaflexiviridae; Potexvirus

Average proteome isoelectric point is 6.82

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 5 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|Q65978|Q65978_9VIRU Coat protein OS=Cassava common mosaic virus OX=39046 PE=3 SV=1
MM1 pKa = 7.45ATPTSTTPTTATITQAATTPLSALSTAPTDD31 pKa = 3.78EE32 pKa = 4.19EE33 pKa = 5.28LSRR36 pKa = 11.84LDD38 pKa = 5.07LKK40 pKa = 10.71PASNLVASADD50 pKa = 3.66ALSAIAADD58 pKa = 3.66WASLKK63 pKa = 10.84VPTAQLMRR71 pKa = 11.84HH72 pKa = 5.84ALDD75 pKa = 3.84LVNFCFDD82 pKa = 3.9SGSSKK87 pKa = 9.28YY88 pKa = 6.42TTVEE92 pKa = 4.14GSSPTPTIPRR102 pKa = 11.84AALAGAVRR110 pKa = 11.84KK111 pKa = 8.27HH112 pKa = 3.55TTLRR116 pKa = 11.84QFCRR120 pKa = 11.84YY121 pKa = 7.3YY122 pKa = 11.42AKK124 pKa = 10.32IIWNARR130 pKa = 11.84VKK132 pKa = 11.15ANIPPAGYY140 pKa = 10.7ANAHH144 pKa = 6.47IKK146 pKa = 10.25PEE148 pKa = 3.86QAFAGFDD155 pKa = 3.58FFDD158 pKa = 3.71GVMNVAALEE167 pKa = 4.09PSGGLVRR174 pKa = 11.84EE175 pKa = 4.33PTPQEE180 pKa = 3.71IIAAEE185 pKa = 4.14TARR188 pKa = 11.84SLNLFEE194 pKa = 5.15AQSKK198 pKa = 10.12GNNLATNATQVTRR211 pKa = 11.84GRR213 pKa = 11.84LSSSEE218 pKa = 3.99PQVQFLTGVDD228 pKa = 3.65EE229 pKa = 4.44

Molecular weight: 24.27 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|Q65977|Q65977_9VIRU Movement protein TGBp3 OS=Cassava common mosaic virus OX=39046 PE=3 SV=1
MM1 pKa = 7.56SGHH4 pKa = 6.34HH5 pKa = 6.78HH6 pKa = 6.73LTPPTDD12 pKa = 3.36YY13 pKa = 11.28SKK15 pKa = 11.51AVLAAVIGISSSIFIHH31 pKa = 6.66TITRR35 pKa = 11.84STNPHH40 pKa = 5.62VGDD43 pKa = 4.66NIHH46 pKa = 6.73ALPHH50 pKa = 5.36GGYY53 pKa = 10.22YY54 pKa = 9.63RR55 pKa = 11.84DD56 pKa = 3.77GTKK59 pKa = 8.99TVYY62 pKa = 10.69YY63 pKa = 10.02GGPGPTAVSASAGKK77 pKa = 9.73FWAFLCIFTISGFLFFSNRR96 pKa = 11.84HH97 pKa = 4.85RR98 pKa = 11.84TNSSCSCRR106 pKa = 11.84PNLGANN112 pKa = 3.5

Molecular weight: 12.01 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

5

0

5

2118

97

1449

423.6

47.31

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

8.546 ± 1.472

1.228 ± 0.396

4.344 ± 0.456

6.468 ± 1.556

3.919 ± 0.259

5.241 ± 1.202

3.069 ± 0.688

5.996 ± 0.483

6.657 ± 1.572

10.67 ± 0.9

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

1.889 ± 0.562

3.683 ± 0.328

6.374 ± 0.574

4.438 ± 0.655

4.297 ± 0.298

7.224 ± 1.552

7.129 ± 1.03

4.485 ± 0.731

1.228 ± 0.272

3.116 ± 0.354
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski