Canis familiaris papillomavirus 2

Taxonomy: Viruses; Monodnaviria; Shotokuvirae; Cossaviricota; Papovaviricetes; Zurhausenvirales; Papillomaviridae; Firstpapillomavirinae; Taupapillomavirus; Taupapillomavirus 1

Average proteome isoelectric point is 6.25

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 8 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|Q647I1|Q647I1_9PAPI Protein E6 OS=Canis familiaris papillomavirus 2 OX=292792 GN=E6 PE=3 SV=1
MM1 pKa = 7.73RR2 pKa = 11.84GSSPIIRR9 pKa = 11.84DD10 pKa = 2.73IDD12 pKa = 3.83LEE14 pKa = 4.26LEE16 pKa = 4.24EE17 pKa = 5.38LVLPANLLSGEE28 pKa = 4.16TLEE31 pKa = 4.39TEE33 pKa = 4.15EE34 pKa = 5.5EE35 pKa = 4.08EE36 pKa = 4.42LQRR39 pKa = 11.84EE40 pKa = 4.23PGRR43 pKa = 11.84YY44 pKa = 8.22RR45 pKa = 11.84VVTLCNICHH54 pKa = 6.02SSLRR58 pKa = 11.84LFVEE62 pKa = 4.47VADD65 pKa = 4.31EE66 pKa = 4.03SLIRR70 pKa = 11.84LFQQLLLDD78 pKa = 4.0GLGIICATCHH88 pKa = 6.56KK89 pKa = 10.12EE90 pKa = 3.8HH91 pKa = 6.88FSDD94 pKa = 3.74GRR96 pKa = 11.84RR97 pKa = 11.84RR98 pKa = 3.42

Molecular weight: 11.21 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|Q647H9|Q647H9_9PAPI Replication protein E1 OS=Canis familiaris papillomavirus 2 OX=292792 GN=E1 PE=3 SV=1
MM1 pKa = 7.56LEE3 pKa = 3.76SLARR7 pKa = 11.84RR8 pKa = 11.84FDD10 pKa = 3.61VLQEE14 pKa = 4.12VMLHH18 pKa = 6.22HH19 pKa = 6.59YY20 pKa = 10.23EE21 pKa = 4.25SGSKK25 pKa = 10.55KK26 pKa = 9.87LTDD29 pKa = 3.21QCNYY33 pKa = 8.66WEE35 pKa = 4.16AARR38 pKa = 11.84RR39 pKa = 11.84EE40 pKa = 4.35SALLHH45 pKa = 5.18YY46 pKa = 10.22ARR48 pKa = 11.84KK49 pKa = 9.78NRR51 pKa = 11.84ITRR54 pKa = 11.84LGITPVPSLATSEE67 pKa = 4.31NSAKK71 pKa = 10.39KK72 pKa = 10.06AIRR75 pKa = 11.84MSLLLSSLCNSPYY88 pKa = 10.24KK89 pKa = 10.47DD90 pKa = 4.25EE91 pKa = 4.64PWTLADD97 pKa = 3.56TSIEE101 pKa = 3.93LWEE104 pKa = 5.01CPPKK108 pKa = 11.06GCFKK112 pKa = 10.9KK113 pKa = 10.85GGFTVDD119 pKa = 3.23VLFDD123 pKa = 4.04NDD125 pKa = 3.83PGNVFPYY132 pKa = 9.12TAWAYY137 pKa = 9.81IYY139 pKa = 9.67YY140 pKa = 10.24QNQNDD145 pKa = 3.52EE146 pKa = 4.5WIKK149 pKa = 10.83VPGQVDD155 pKa = 3.92YY156 pKa = 11.68DD157 pKa = 3.74GLFYY161 pKa = 10.68TDD163 pKa = 3.45EE164 pKa = 5.82DD165 pKa = 4.25GEE167 pKa = 4.14KK168 pKa = 10.0RR169 pKa = 11.84YY170 pKa = 10.12YY171 pKa = 8.82QTFAKK176 pKa = 10.41DD177 pKa = 3.22ALRR180 pKa = 11.84FGTTGMWKK188 pKa = 9.19VCYY191 pKa = 9.32KK192 pKa = 10.5HH193 pKa = 6.57HH194 pKa = 6.45VLSALISSSGSSNSAASSSWQSNIEE219 pKa = 4.16SSSGDD224 pKa = 3.02QWSAQWQWEE233 pKa = 4.62GPTGSSASSTAASVSSSSTCSRR255 pKa = 11.84TGGTRR260 pKa = 11.84EE261 pKa = 3.92AGGSFDD267 pKa = 4.87QGGSSQAGGAEE278 pKa = 4.04RR279 pKa = 11.84GRR281 pKa = 11.84GRR283 pKa = 11.84GRR285 pKa = 11.84GRR287 pKa = 11.84GRR289 pKa = 11.84GRR291 pKa = 11.84GRR293 pKa = 11.84GRR295 pKa = 11.84ASSGSGSGSGSTSRR309 pKa = 11.84SGSRR313 pKa = 11.84SDD315 pKa = 3.56SVSGSGGAKK324 pKa = 9.08PVYY327 pKa = 8.28PQPRR331 pKa = 11.84VGGNKK336 pKa = 9.67APQKK340 pKa = 9.52RR341 pKa = 11.84QRR343 pKa = 11.84EE344 pKa = 4.33APSDD348 pKa = 3.87TEE350 pKa = 3.9DD351 pKa = 3.22LPRR354 pKa = 11.84NRR356 pKa = 11.84GVLGRR361 pKa = 11.84GRR363 pKa = 11.84GASPSTWSSNVRR375 pKa = 11.84NIPPNTPTIPTLSTPGPCPGDD396 pKa = 3.15RR397 pKa = 11.84AGVGRR402 pKa = 11.84GGGPRR407 pKa = 11.84EE408 pKa = 3.99PKK410 pKa = 10.49APRR413 pKa = 11.84LSPAVPLGTVGRR425 pKa = 11.84RR426 pKa = 11.84PGEE429 pKa = 3.84PQEE432 pKa = 4.16PLEE435 pKa = 4.39PEE437 pKa = 4.05PGRR440 pKa = 11.84SQEE443 pKa = 3.92QNRR446 pKa = 11.84PFPVILVKK454 pKa = 10.93GDD456 pKa = 3.54GNASKK461 pKa = 10.44CWRR464 pKa = 11.84RR465 pKa = 11.84RR466 pKa = 11.84LRR468 pKa = 11.84LRR470 pKa = 11.84YY471 pKa = 9.49SGLFEE476 pKa = 4.86SISTGFSWTTASGPHH491 pKa = 5.7RR492 pKa = 11.84VCRR495 pKa = 11.84PRR497 pKa = 11.84MLIAFNSDD505 pKa = 2.84GQRR508 pKa = 11.84DD509 pKa = 3.79HH510 pKa = 6.78FLKK513 pKa = 10.7NIKK516 pKa = 9.37IPKK519 pKa = 9.25VLDD522 pKa = 3.12IALGSFDD529 pKa = 4.16SLL531 pKa = 4.03

Molecular weight: 57.52 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

8

0

8

2754

41

607

344.3

38.13

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

5.483 ± 0.668

2.687 ± 0.99

5.556 ± 0.372

6.173 ± 0.51

4.357 ± 0.571

8.315 ± 1.132

1.961 ± 0.327

4.103 ± 0.637

4.466 ± 0.648

9.005 ± 0.912

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

1.743 ± 0.423

4.031 ± 0.6

7.734 ± 1.497

3.595 ± 0.326

6.572 ± 0.816

8.533 ± 1.247

5.81 ± 0.844

5.846 ± 0.767

1.38 ± 0.36

2.651 ± 0.408
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski