Chitinimonas sp. BJB300

Taxonomy: cellular organisms; Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Chitinimonas; unclassified Chitinimonas

Average proteome isoelectric point is 6.73

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 4049 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A2G3K9J4|A0A2G3K9J4_9BURK Uncharacterized protein OS=Chitinimonas sp. BJB300 OX=1559339 GN=CSQ89_00600 PE=4 SV=1
MM1 pKa = 6.72QTLCIQIQPDD11 pKa = 3.24RR12 pKa = 11.84VADD15 pKa = 3.93FDD17 pKa = 4.22EE18 pKa = 4.48ATVLATCQGLRR29 pKa = 11.84VFKK32 pKa = 10.25PLIAAFQMEE41 pKa = 4.45QGEE44 pKa = 5.25DD45 pKa = 3.41DD46 pKa = 4.51GPWINLSFEE55 pKa = 4.46TEE57 pKa = 3.73HH58 pKa = 7.28PARR61 pKa = 11.84VWPLLQAAFYY71 pKa = 10.68DD72 pKa = 4.11AGPLGDD78 pKa = 3.79VMRR81 pKa = 11.84ASSMAMCSGEE91 pKa = 4.65AGWDD95 pKa = 3.61DD96 pKa = 4.18YY97 pKa = 12.06LLLYY101 pKa = 10.51HH102 pKa = 6.91YY103 pKa = 10.7DD104 pKa = 3.34QDD106 pKa = 5.34LEE108 pKa = 4.53LDD110 pKa = 3.88SLDD113 pKa = 4.27TPGTTANN120 pKa = 3.79

Molecular weight: 13.35 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A2G3K591|A0A2G3K591_9BURK ABC transporter OS=Chitinimonas sp. BJB300 OX=1559339 GN=CSQ89_08770 PE=4 SV=1
MM1 pKa = 7.35KK2 pKa = 9.36RR3 pKa = 11.84TYY5 pKa = 9.6QPSVIRR11 pKa = 11.84RR12 pKa = 11.84KK13 pKa = 8.64RR14 pKa = 11.84THH16 pKa = 5.95GFLVRR21 pKa = 11.84SRR23 pKa = 11.84TRR25 pKa = 11.84GGRR28 pKa = 11.84AVLAARR34 pKa = 11.84RR35 pKa = 11.84AKK37 pKa = 10.11GRR39 pKa = 11.84HH40 pKa = 4.94SLSVV44 pKa = 3.04

Molecular weight: 5.07 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

4049

0

4049

1312742

26

5314

324.2

35.53

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

11.18 ± 0.054

0.923 ± 0.015

5.381 ± 0.029

5.448 ± 0.036

3.553 ± 0.024

7.71 ± 0.048

2.186 ± 0.021

5.009 ± 0.029

4.153 ± 0.03

10.996 ± 0.06

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.382 ± 0.02

3.462 ± 0.035

4.734 ± 0.029

4.39 ± 0.027

6.102 ± 0.034

5.806 ± 0.033

5.474 ± 0.045

7.063 ± 0.032

1.383 ± 0.017

2.665 ± 0.029
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski