Corynebacterium sp. KPL1989

Taxonomy: cellular organisms; Bacteria; Terrabacteria group; Actinobacteria; Actinomycetia; Corynebacteriales; Corynebacteriaceae; Corynebacterium; unclassified Corynebacterium

Average proteome isoelectric point is 6.01

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 2066 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|U7MJG2|U7MJG2_9CORY SWIM-type domain-containing protein OS=Corynebacterium sp. KPL1989 OX=1203622 GN=HMPREF1290_01959 PE=4 SV=1
MM1 pKa = 7.94RR2 pKa = 11.84YY3 pKa = 9.75SSRR6 pKa = 11.84FPLSFGQGKK15 pKa = 9.91AFLALSLMAFLVACSSEE32 pKa = 4.13IEE34 pKa = 4.22QALPAASEE42 pKa = 4.19SGGPVTISVRR52 pKa = 11.84DD53 pKa = 3.57AYY55 pKa = 9.47GQHH58 pKa = 4.7WVEE61 pKa = 5.46FGVQCPYY68 pKa = 10.87TSVDD72 pKa = 4.7DD73 pKa = 4.16ISEE76 pKa = 4.22HH77 pKa = 6.93LGLEE81 pKa = 3.86PDD83 pKa = 3.25EE84 pKa = 6.05AYY86 pKa = 10.69DD87 pKa = 3.78LGSYY91 pKa = 7.62DD92 pKa = 3.66TQEE95 pKa = 3.78VVYY98 pKa = 10.7LKK100 pKa = 10.9DD101 pKa = 3.17ADD103 pKa = 3.92GDD105 pKa = 3.78VDD107 pKa = 5.51FDD109 pKa = 3.78VLDD112 pKa = 4.19RR113 pKa = 11.84LDD115 pKa = 3.44VTLCSHH121 pKa = 7.68RR122 pKa = 11.84APEE125 pKa = 4.13YY126 pKa = 9.48FGYY129 pKa = 10.39RR130 pKa = 11.84GWLPADD136 pKa = 3.61LPLIFEE142 pKa = 4.37VNYY145 pKa = 10.67DD146 pKa = 3.07GWALTGVGDD155 pKa = 3.96TTTGG159 pKa = 3.11

Molecular weight: 17.45 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|U7MVC1|U7MVC1_9CORY DUF2183 domain-containing protein OS=Corynebacterium sp. KPL1989 OX=1203622 GN=HMPREF1290_00244 PE=4 SV=1
MM1 pKa = 7.69AKK3 pKa = 10.06GKK5 pKa = 8.69RR6 pKa = 11.84TFQPNNRR13 pKa = 11.84RR14 pKa = 11.84RR15 pKa = 11.84ARR17 pKa = 11.84VHH19 pKa = 5.99GFRR22 pKa = 11.84TRR24 pKa = 11.84MRR26 pKa = 11.84TRR28 pKa = 11.84AGRR31 pKa = 11.84AIVAARR37 pKa = 11.84RR38 pKa = 11.84KK39 pKa = 9.67KK40 pKa = 10.59GRR42 pKa = 11.84SKK44 pKa = 10.17LTAA47 pKa = 4.04

Molecular weight: 5.48 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

2066

0

2066

683554

27

3635

330.9

35.87

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

11.58 ± 0.068

0.712 ± 0.015

5.974 ± 0.049

6.318 ± 0.061

3.294 ± 0.034

8.242 ± 0.053

2.317 ± 0.025

5.13 ± 0.037

3.439 ± 0.053

9.371 ± 0.059

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.16 ± 0.022

3.215 ± 0.036

4.885 ± 0.036

3.841 ± 0.032

5.987 ± 0.049

6.237 ± 0.04

5.904 ± 0.038

7.808 ± 0.043

1.339 ± 0.024

2.247 ± 0.023
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski