Water chestnut soymovirus 1

Taxonomy: Viruses; Riboviria; Pararnavirae; Artverviricota; Revtraviricetes; Ortervirales; Caulimoviridae; Soymovirus; unclassified Soymovirus

Average proteome isoelectric point is 6.75

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 9 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A172PC86|A0A172PC86_9VIRU Reverse transcriptase OS=Water chestnut soymovirus 1 OX=1848040 GN=WCSV-1gp5 PE=4 SV=1
MM1 pKa = 7.75SNLEE5 pKa = 4.26TLNKK9 pKa = 10.31DD10 pKa = 3.22IEE12 pKa = 4.63STEE15 pKa = 3.76QMIEE19 pKa = 3.95YY20 pKa = 9.95LQDD23 pKa = 3.1EE24 pKa = 5.09LEE26 pKa = 5.26RR27 pKa = 11.84ITQTLVVLRR36 pKa = 11.84EE37 pKa = 4.11TLQSLNNEE45 pKa = 4.23RR46 pKa = 11.84NDD48 pKa = 3.63LEE50 pKa = 4.14ASRR53 pKa = 11.84EE54 pKa = 3.87EE55 pKa = 4.4LEE57 pKa = 4.13NEE59 pKa = 3.94EE60 pKa = 4.07YY61 pKa = 10.92LAIEE65 pKa = 5.13DD66 pKa = 4.35EE67 pKa = 4.72LSSHH71 pKa = 7.6DD72 pKa = 4.03YY73 pKa = 11.01YY74 pKa = 11.72DD75 pKa = 3.59NLTEE79 pKa = 4.24EE80 pKa = 4.68EE81 pKa = 4.82YY82 pKa = 11.0EE83 pKa = 3.94NLMNRR88 pKa = 11.84LEE90 pKa = 4.05II91 pKa = 4.69

Molecular weight: 10.95 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A172PC90|A0A172PC90_9VIRU Uncharacterized protein OS=Water chestnut soymovirus 1 OX=1848040 GN=WCSV-1gp9 PE=4 SV=1
MM1 pKa = 7.17TKK3 pKa = 10.39KK4 pKa = 10.53KK5 pKa = 10.15VVNVGKK11 pKa = 10.67RR12 pKa = 11.84KK13 pKa = 8.89QKK15 pKa = 10.45KK16 pKa = 9.12LKK18 pKa = 10.26KK19 pKa = 9.0EE20 pKa = 3.64LWRR23 pKa = 11.84NEE25 pKa = 3.85QFRR28 pKa = 11.84GLAQDD33 pKa = 4.33KK34 pKa = 10.49GIKK37 pKa = 9.88CIIRR41 pKa = 11.84AMVNANHH48 pKa = 5.92SVKK51 pKa = 10.77SIVRR55 pKa = 11.84NVFRR59 pKa = 5.91

Molecular weight: 6.95 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

9

0

9

2363

59

680

262.6

30.52

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

3.174 ± 0.602

1.523 ± 0.336

4.951 ± 0.289

9.31 ± 1.266

3.512 ± 0.487

4.613 ± 0.426

2.243 ± 0.189

7.871 ± 0.986

10.072 ± 0.844

10.03 ± 0.578

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.497 ± 0.337

6.348 ± 0.805

3.724 ± 0.521

4.994 ± 0.428

4.528 ± 0.567

5.544 ± 0.433

5.459 ± 0.718

5.121 ± 0.341

1.016 ± 0.219

3.47 ± 0.353
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski