Desulfosporosinus youngiae DSM 17734

Taxonomy: cellular organisms; Bacteria; Terrabacteria group; Firmicutes; Clostridia; Eubacteriales; Peptococcaceae; Desulfosporosinus; Desulfosporosinus youngiae

Average proteome isoelectric point is 6.39

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 5108 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|H5Y5T4|H5Y5T4_9FIRM Uncharacterized protein OS=Desulfosporosinus youngiae DSM 17734 OX=768710 GN=DesyoDRAFT_3826 PE=4 SV=1
MM1 pKa = 7.14KK2 pKa = 9.47TKK4 pKa = 10.55QKK6 pKa = 10.29ILSLFMMLILGLTFFVAPAPAKK28 pKa = 10.38AATDD32 pKa = 3.76MLTLADD38 pKa = 4.39SEE40 pKa = 4.83HH41 pKa = 5.65FTILGEE47 pKa = 4.4VNDD50 pKa = 4.53EE51 pKa = 4.17VADD54 pKa = 3.88IQVLGLDD61 pKa = 3.49GTTWMTEE68 pKa = 4.04EE69 pKa = 4.42ISDD72 pKa = 4.21PEE74 pKa = 4.34NIEE77 pKa = 3.82WTTSDD82 pKa = 3.03ASVVKK87 pKa = 10.09FLDD90 pKa = 3.68GSTPVATIDD99 pKa = 3.28EE100 pKa = 4.56TDD102 pKa = 3.31TVKK105 pKa = 10.28IRR107 pKa = 11.84LLAEE111 pKa = 3.54GRR113 pKa = 11.84AYY115 pKa = 9.02VTAHH119 pKa = 6.17YY120 pKa = 11.15DD121 pKa = 3.35SMEE124 pKa = 3.73VSAYY128 pKa = 10.48VVVEE132 pKa = 4.17TKK134 pKa = 10.65GLPTASVSDD143 pKa = 2.99ISVYY147 pKa = 10.62VDD149 pKa = 3.72APGTVNDD156 pKa = 4.85FYY158 pKa = 11.69VINEE162 pKa = 4.28TVNLSDD168 pKa = 6.05LDD170 pKa = 3.74WLLDD174 pKa = 3.67QSQTLQLNCSALHH187 pKa = 5.92ALAMAGNEE195 pKa = 4.32YY196 pKa = 10.96YY197 pKa = 10.62SDD199 pKa = 4.51PDD201 pKa = 3.25WAEE204 pKa = 3.78NNLTVFNGGGYY215 pKa = 9.41VAGIGTDD222 pKa = 3.75FASGLEE228 pKa = 4.08GWVYY232 pKa = 10.12TIVDD236 pKa = 3.75VNNNIIEE243 pKa = 4.44PDD245 pKa = 3.64YY246 pKa = 10.76PAASYY251 pKa = 9.94EE252 pKa = 4.08LQPGDD257 pKa = 3.89SVVWEE262 pKa = 4.25YY263 pKa = 11.63KK264 pKa = 10.4SLYY267 pKa = 9.82

Molecular weight: 29.16 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|H5XRQ4|H5XRQ4_9FIRM Sporulation protein YabP OS=Desulfosporosinus youngiae DSM 17734 OX=768710 GN=DesyoDRAFT_0081 PE=4 SV=1
MM1 pKa = 7.36KK2 pKa = 9.44RR3 pKa = 11.84TYY5 pKa = 9.19QPKK8 pKa = 8.78NRR10 pKa = 11.84RR11 pKa = 11.84HH12 pKa = 5.44KK13 pKa = 10.09RR14 pKa = 11.84VHH16 pKa = 5.93GFLSRR21 pKa = 11.84MSTPTGRR28 pKa = 11.84NVIKK32 pKa = 10.5RR33 pKa = 11.84RR34 pKa = 11.84RR35 pKa = 11.84LKK37 pKa = 10.52GRR39 pKa = 11.84KK40 pKa = 8.8KK41 pKa = 10.81LSVV44 pKa = 3.15

Molecular weight: 5.36 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

5108

0

5108

1565203

29

4202

306.4

34.08

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

7.884 ± 0.041

1.116 ± 0.016

4.98 ± 0.027

6.869 ± 0.047

4.052 ± 0.027

7.46 ± 0.038

1.78 ± 0.017

7.393 ± 0.034

6.131 ± 0.033

10.437 ± 0.044

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.658 ± 0.018

4.103 ± 0.027

3.935 ± 0.024

3.749 ± 0.024

4.74 ± 0.038

6.076 ± 0.034

5.283 ± 0.043

7.007 ± 0.028

1.056 ± 0.014

3.29 ± 0.02
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski