Sutterella sp. CAG:397

Taxonomy: cellular organisms; Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Sutterellaceae; Sutterella; environmental samples

Average proteome isoelectric point is 6.82

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 1804 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|R7C0J0|R7C0J0_9BURK Ribonuclease HII OS=Sutterella sp. CAG:397 OX=1262976 GN=rnhB PE=3 SV=1
MM1 pKa = 7.73PEE3 pKa = 3.79EE4 pKa = 3.98LVIFVFYY11 pKa = 11.04DD12 pKa = 3.39VVGNGGNAIFVEE24 pKa = 4.76YY25 pKa = 10.53SLSSQFGLYY34 pKa = 10.28LVVIEE39 pKa = 4.58MEE41 pKa = 3.92EE42 pKa = 4.05FGYY45 pKa = 10.16QFQWTHH51 pKa = 4.92

Molecular weight: 5.94 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|R7C4R1|R7C4R1_9BURK ATP synthase epsilon chain OS=Sutterella sp. CAG:397 OX=1262976 GN=atpC PE=3 SV=1
MM1 pKa = 6.85ATKK4 pKa = 9.51RR5 pKa = 11.84TYY7 pKa = 10.29QPSKK11 pKa = 8.35IKK13 pKa = 10.26RR14 pKa = 11.84VRR16 pKa = 11.84THH18 pKa = 6.04GFLVRR23 pKa = 11.84SRR25 pKa = 11.84TKK27 pKa = 10.45GGRR30 pKa = 11.84HH31 pKa = 3.49VLARR35 pKa = 11.84RR36 pKa = 11.84RR37 pKa = 11.84AKK39 pKa = 10.27GRR41 pKa = 11.84HH42 pKa = 5.09KK43 pKa = 10.72LALL46 pKa = 3.92

Molecular weight: 5.38 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

1804

0

1804

560900

32

1940

310.9

34.0

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

11.673 ± 0.076

1.314 ± 0.022

5.278 ± 0.044

6.197 ± 0.061

4.076 ± 0.04

7.683 ± 0.058

1.826 ± 0.026

5.205 ± 0.04

5.299 ± 0.052

9.608 ± 0.062

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.666 ± 0.029

3.051 ± 0.028

4.465 ± 0.034

2.829 ± 0.031

6.039 ± 0.05

5.259 ± 0.04

5.905 ± 0.039

7.908 ± 0.054

1.262 ± 0.024

2.454 ± 0.035
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski