Roseivivax halotolerans

Taxonomy: cellular organisms; Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Roseobacteraceae; Roseivivax

Average proteome isoelectric point is 6.02

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 3742 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A1I5ZDK0|A0A1I5ZDK0_9RHOB Condensin subunit ScpA OS=Roseivivax halotolerans OX=93684 GN=SAMN05421853_10945 PE=4 SV=1
MM1 pKa = 6.95LTKK4 pKa = 10.31TKK6 pKa = 9.87TLFAGSALCAVMAVPAYY23 pKa = 9.7SQVITSEE30 pKa = 4.18DD31 pKa = 3.27ATLDD35 pKa = 3.95LMLTPDD41 pKa = 3.54STSDD45 pKa = 3.0IVATVPADD53 pKa = 3.48TEE55 pKa = 4.24FSVNVCLEE63 pKa = 3.94AVDD66 pKa = 3.55WCRR69 pKa = 11.84VDD71 pKa = 4.24LAGTAGWVQKK81 pKa = 10.77AALDD85 pKa = 3.67VDD87 pKa = 4.77FDD89 pKa = 5.25RR90 pKa = 11.84IPVMTYY96 pKa = 9.65DD97 pKa = 3.3WDD99 pKa = 3.89RR100 pKa = 11.84SEE102 pKa = 4.15VVAVVRR108 pKa = 11.84TDD110 pKa = 3.06VDD112 pKa = 3.5PTYY115 pKa = 10.14EE116 pKa = 4.15TVIVYY121 pKa = 10.73ADD123 pKa = 3.91ANPVQTVTFAEE134 pKa = 4.55PVAVGTVVPQDD145 pKa = 3.29VTLYY149 pKa = 10.18NVPDD153 pKa = 3.58EE154 pKa = 4.69PYY156 pKa = 10.79SYY158 pKa = 9.78VTLNEE163 pKa = 3.41RR164 pKa = 11.84VAIVDD169 pKa = 3.01VDD171 pKa = 3.54TRR173 pKa = 11.84EE174 pKa = 3.94IVYY177 pKa = 10.22VPSNN181 pKa = 3.25

Molecular weight: 19.71 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A1I5YXI0|A0A1I5YXI0_9RHOB Uncharacterized protein involved in exopolysaccharide biosynthesis OS=Roseivivax halotolerans OX=93684 GN=SAMN05421853_10730 PE=4 SV=1
MM1 pKa = 7.55SNRR4 pKa = 11.84FIAMILAASTAIAVTAQEE22 pKa = 4.36ARR24 pKa = 11.84AKK26 pKa = 10.24PEE28 pKa = 3.84DD29 pKa = 3.51VAKK32 pKa = 10.69VVGGIALLYY41 pKa = 10.3IVGEE45 pKa = 4.04ALAAEE50 pKa = 4.28TRR52 pKa = 11.84KK53 pKa = 10.69DD54 pKa = 3.74SNNEE58 pKa = 3.68TTVVVHH64 pKa = 6.49GKK66 pKa = 8.25PAKK69 pKa = 10.03AGHH72 pKa = 5.89RR73 pKa = 11.84QANGRR78 pKa = 11.84GRR80 pKa = 11.84VALPQRR86 pKa = 11.84CRR88 pKa = 11.84TVVDD92 pKa = 3.18THH94 pKa = 6.68RR95 pKa = 11.84GKK97 pKa = 10.04HH98 pKa = 4.33RR99 pKa = 11.84QVYY102 pKa = 9.54IARR105 pKa = 11.84CLEE108 pKa = 3.9RR109 pKa = 11.84NYY111 pKa = 10.59VDD113 pKa = 3.64VARR116 pKa = 11.84LPEE119 pKa = 4.43ACALPVNTNRR129 pKa = 11.84GRR131 pKa = 11.84RR132 pKa = 11.84LAYY135 pKa = 9.68GARR138 pKa = 11.84CLEE141 pKa = 4.06RR142 pKa = 11.84YY143 pKa = 10.17GFDD146 pKa = 3.06TLGRR150 pKa = 11.84RR151 pKa = 3.77

Molecular weight: 16.55 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

3742

0

3742

1142359

25

2718

305.3

33.14

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

12.508 ± 0.059

0.839 ± 0.012

6.179 ± 0.032

6.623 ± 0.039

3.652 ± 0.025

8.763 ± 0.042

1.969 ± 0.02

5.083 ± 0.029

2.879 ± 0.034

10.004 ± 0.044

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.661 ± 0.02

2.362 ± 0.02

5.097 ± 0.028

2.913 ± 0.021

7.155 ± 0.043

5.273 ± 0.032

5.404 ± 0.027

7.089 ± 0.032

1.394 ± 0.014

2.152 ± 0.02
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski