Dorea formicigenerans CAG:28

Taxonomy: cellular organisms; Bacteria; Terrabacteria group; Firmicutes; Clostridia; Eubacteriales; Lachnospiraceae; Dorea; environmental samples

Average proteome isoelectric point is 5.98

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 2461 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|R6SVG2|R6SVG2_9FIRM Ferritin-like diiron domain-containing protein OS=Dorea formicigenerans CAG:28 OX=1263073 GN=BN586_00653 PE=4 SV=1
MM1 pKa = 7.36KK2 pKa = 10.6AEE4 pKa = 4.05FDD6 pKa = 3.49EE7 pKa = 4.71AVYY10 pKa = 10.65DD11 pKa = 4.05EE12 pKa = 4.54QVSMMEE18 pKa = 4.1MVLDD22 pKa = 3.51VDD24 pKa = 5.57DD25 pKa = 4.95IVSEE29 pKa = 4.06MSAIRR34 pKa = 11.84DD35 pKa = 3.89EE36 pKa = 4.39YY37 pKa = 11.14CKK39 pKa = 10.91YY40 pKa = 10.86LL41 pKa = 3.8

Molecular weight: 4.84 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|R6SNG9|R6SNG9_9FIRM tRNA modification GTPase MnmE OS=Dorea formicigenerans CAG:28 OX=1263073 GN=mnmE PE=3 SV=1
MM1 pKa = 7.67KK2 pKa = 8.72MTFQPKK8 pKa = 8.95KK9 pKa = 7.58RR10 pKa = 11.84QRR12 pKa = 11.84SKK14 pKa = 9.0VHH16 pKa = 5.93GFRR19 pKa = 11.84SRR21 pKa = 11.84MSTAGGRR28 pKa = 11.84KK29 pKa = 8.71VLAARR34 pKa = 11.84RR35 pKa = 11.84AKK37 pKa = 10.1GRR39 pKa = 11.84KK40 pKa = 8.83KK41 pKa = 10.63LSAA44 pKa = 3.95

Molecular weight: 5.03 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

2461

0

2461

755461

29

3288

307.0

34.39

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

7.426 ± 0.056

1.506 ± 0.017

5.683 ± 0.048

7.898 ± 0.063

3.832 ± 0.036

7.222 ± 0.045

1.781 ± 0.023

7.621 ± 0.045

7.279 ± 0.045

8.737 ± 0.051

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

3.276 ± 0.025

4.276 ± 0.03

3.241 ± 0.029

3.282 ± 0.032

4.12 ± 0.037

5.445 ± 0.038

5.323 ± 0.034

7.149 ± 0.043

0.843 ± 0.016

4.057 ± 0.034
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski