Soonwooa buanensis

Taxonomy: cellular organisms; Bacteria; FCB group; Bacteroidetes/Chlorobi group; Bacteroidetes; Flavobacteriia; Flavobacteriales; Weeksellaceae; Soonwooa

Average proteome isoelectric point is 6.68

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 3053 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A1T5E8C0|A0A1T5E8C0_9FLAO Predicted nuclease of restriction endonuclease-like (RecB) superfamily DUF1016 family OS=Soonwooa buanensis OX=619805 GN=SAMN05660477_01182 PE=4 SV=1
MM1 pKa = 7.59KK2 pKa = 10.36GLLKK6 pKa = 9.8IYY8 pKa = 10.57HH9 pKa = 7.04PDD11 pKa = 3.18EE12 pKa = 3.9TLKK15 pKa = 10.87YY16 pKa = 9.46HH17 pKa = 6.6IQNTYY22 pKa = 10.29CKK24 pKa = 10.02AVYY27 pKa = 10.31NNSLNTLEE35 pKa = 4.48VEE37 pKa = 4.86IITDD41 pKa = 3.57DD42 pKa = 4.22SLDD45 pKa = 3.85HH46 pKa = 7.47VDD48 pKa = 6.0DD49 pKa = 7.02DD50 pKa = 4.15SLQYY54 pKa = 11.05NFPQLSFKK62 pKa = 11.09VSDD65 pKa = 3.86FPINSEE71 pKa = 3.91NLQNQSFKK79 pKa = 10.53IDD81 pKa = 3.89DD82 pKa = 4.15NDD84 pKa = 3.69DD85 pKa = 3.44VVYY88 pKa = 10.81TEE90 pKa = 4.89VDD92 pKa = 3.36LFDD95 pKa = 6.32DD96 pKa = 4.0EE97 pKa = 5.77DD98 pKa = 5.28AYY100 pKa = 11.38LYY102 pKa = 10.85EE103 pKa = 5.15NEE105 pKa = 5.15LSFDD109 pKa = 3.89LNEE112 pKa = 4.33NGEE115 pKa = 4.25LQLFWEE121 pKa = 5.01GEE123 pKa = 3.56IDD125 pKa = 4.69DD126 pKa = 5.5FYY128 pKa = 10.95TGSDD132 pKa = 3.07EE133 pKa = 4.66TIPFKK138 pKa = 10.92LKK140 pKa = 10.67CHH142 pKa = 6.73FKK144 pKa = 10.67QDD146 pKa = 4.4DD147 pKa = 3.95IEE149 pKa = 5.24VDD151 pKa = 3.67DD152 pKa = 4.45

Molecular weight: 17.89 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A1T5FPD0|A0A1T5FPD0_9FLAO Murein DD-endopeptidase MepM and murein hydrolase activator NlpD contain LysM domain OS=Soonwooa buanensis OX=619805 GN=SAMN05660477_02192 PE=4 SV=1
MM1 pKa = 7.69SKK3 pKa = 9.0RR4 pKa = 11.84TFQPSEE10 pKa = 3.59RR11 pKa = 11.84KK12 pKa = 9.33RR13 pKa = 11.84RR14 pKa = 11.84NKK16 pKa = 10.03HH17 pKa = 3.97GFRR20 pKa = 11.84EE21 pKa = 4.33RR22 pKa = 11.84MSTPNGRR29 pKa = 11.84RR30 pKa = 11.84VLAARR35 pKa = 11.84RR36 pKa = 11.84AKK38 pKa = 9.98GRR40 pKa = 11.84KK41 pKa = 8.93SLTVSAARR49 pKa = 11.84AKK51 pKa = 10.43RR52 pKa = 3.39

Molecular weight: 6.08 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

3053

0

3053

992948

39

2369

325.2

36.77

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

6.438 ± 0.045

0.706 ± 0.012

5.625 ± 0.032

6.436 ± 0.051

5.429 ± 0.038

6.114 ± 0.048

1.597 ± 0.018

7.832 ± 0.042

8.446 ± 0.045

9.145 ± 0.042

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.358 ± 0.019

6.486 ± 0.05

3.313 ± 0.023

3.641 ± 0.027

3.126 ± 0.029

6.592 ± 0.036

5.454 ± 0.042

6.108 ± 0.037

1.023 ± 0.013

4.131 ± 0.032
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski