Vibrio viridaestus

Taxonomy: cellular organisms; Bacteria; Proteobacteria; Gammaproteobacteria; Vibrionales; Vibrionaceae; Vibrio

Average proteome isoelectric point is 6.16

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 4277 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A3N9TIE4|A0A3N9TIE4_9VIBR HlyD family efflux transporter periplasmic adaptor subunit OS=Vibrio viridaestus OX=2487322 GN=EES38_10545 PE=3 SV=1
MM1 pKa = 7.65KK2 pKa = 10.41KK3 pKa = 10.03LLPVATGAFALLTLSGFAQAADD25 pKa = 3.78NDD27 pKa = 3.74YY28 pKa = 11.31GLYY31 pKa = 10.55VGGNYY36 pKa = 10.46GYY38 pKa = 11.25VKK40 pKa = 10.7VDD42 pKa = 3.45GQDD45 pKa = 5.18DD46 pKa = 4.0FDD48 pKa = 6.95DD49 pKa = 5.91DD50 pKa = 4.29NDD52 pKa = 3.87VYY54 pKa = 11.12QGLLGFRR61 pKa = 11.84FNKK64 pKa = 9.99YY65 pKa = 9.43LALEE69 pKa = 4.28GSYY72 pKa = 10.46IDD74 pKa = 3.94FGDD77 pKa = 3.72YY78 pKa = 10.77GKK80 pKa = 10.77SGASASTDD88 pKa = 3.1GYY90 pKa = 8.95TAALKK95 pKa = 10.54VIAPIGEE102 pKa = 4.03RR103 pKa = 11.84VEE105 pKa = 5.08LYY107 pKa = 10.99GKK109 pKa = 10.43GGQLWYY115 pKa = 8.93NTDD118 pKa = 3.42YY119 pKa = 11.51SVLGVNGSRR128 pKa = 11.84DD129 pKa = 3.75DD130 pKa = 3.81EE131 pKa = 4.7GVFAGAGVGFKK142 pKa = 9.59VTDD145 pKa = 3.42NFLVNVEE152 pKa = 4.26YY153 pKa = 9.3TWYY156 pKa = 10.38DD157 pKa = 2.99ADD159 pKa = 3.59IDD161 pKa = 4.06ADD163 pKa = 3.94AVSNGADD170 pKa = 3.28TEE172 pKa = 4.46TDD174 pKa = 3.93FKK176 pKa = 10.67QASVGVEE183 pKa = 3.67YY184 pKa = 10.87RR185 pKa = 11.84FF186 pKa = 3.62

Molecular weight: 20.03 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A3N9TBA4|A0A3N9TBA4_9VIBR Uncharacterized protein OS=Vibrio viridaestus OX=2487322 GN=EES38_21535 PE=4 SV=1
MM1 pKa = 7.45KK2 pKa = 9.5RR3 pKa = 11.84TFQPTVLKK11 pKa = 10.46RR12 pKa = 11.84KK13 pKa = 7.65RR14 pKa = 11.84THH16 pKa = 5.89GFRR19 pKa = 11.84ARR21 pKa = 11.84MATKK25 pKa = 10.44NGRR28 pKa = 11.84KK29 pKa = 9.39VINARR34 pKa = 11.84RR35 pKa = 11.84AKK37 pKa = 10.22GRR39 pKa = 11.84ARR41 pKa = 11.84LSKK44 pKa = 10.83

Molecular weight: 5.18 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

4277

0

4277

1367418

19

2360

319.7

35.59

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

7.98 ± 0.037

1.096 ± 0.013

5.525 ± 0.027

6.218 ± 0.035

4.217 ± 0.026

6.739 ± 0.035

2.242 ± 0.018

7.007 ± 0.033

5.582 ± 0.03

10.273 ± 0.041

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.642 ± 0.017

4.316 ± 0.023

3.816 ± 0.022

4.195 ± 0.028

4.429 ± 0.025

7.038 ± 0.031

5.314 ± 0.025

6.967 ± 0.029

1.239 ± 0.013

3.142 ± 0.02
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski