Youngimonas vesicularis

Taxonomy: cellular organisms; Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Youngimonas

Average proteome isoelectric point is 6.22

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 3652 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A4S3M7G0|A0A4S3M7G0_9RHOB FAA hydrolase family protein OS=Youngimonas vesicularis OX=1294297 GN=E7681_11360 PE=4 SV=1
MM1 pKa = 7.86PNGNAYY7 pKa = 10.18GHH9 pKa = 6.7GNAAQNFHH17 pKa = 6.85NGTANNPNNNGANGHH32 pKa = 6.44SIAMDD37 pKa = 3.35NVPFLSEE44 pKa = 4.1TVFGFDD50 pKa = 3.87LGEE53 pKa = 4.13FSSTPGTNISYY64 pKa = 10.38YY65 pKa = 10.14SQGDD69 pKa = 4.06FIATVPAWRR78 pKa = 11.84GRR80 pKa = 11.84VSHH83 pKa = 7.74DD84 pKa = 2.83IRR86 pKa = 11.84DD87 pKa = 3.51WDD89 pKa = 3.67GDD91 pKa = 3.38GDD93 pKa = 4.65LEE95 pKa = 4.36YY96 pKa = 10.85STMNPGANMLIEE108 pKa = 4.94HH109 pKa = 6.62VDD111 pKa = 3.01GDD113 pKa = 4.0TFEE116 pKa = 4.5FSGVSIEE123 pKa = 6.01DD124 pKa = 3.56YY125 pKa = 11.36DD126 pKa = 4.01NDD128 pKa = 4.1GAGLINLRR136 pKa = 11.84GTGLDD141 pKa = 3.31GSSYY145 pKa = 11.07GLYY148 pKa = 10.56FEE150 pKa = 5.3FDD152 pKa = 3.2PRR154 pKa = 11.84FNQLTIVGSVNSSDD168 pKa = 4.42GTYY171 pKa = 9.73EE172 pKa = 3.55WQRR175 pKa = 11.84FQNFDD180 pKa = 3.59DD181 pKa = 5.09AFDD184 pKa = 4.04FVFTDD189 pKa = 3.75HH190 pKa = 7.39EE191 pKa = 4.42LTQLSVYY198 pKa = 9.47VRR200 pKa = 11.84DD201 pKa = 3.53MALDD205 pKa = 3.86DD206 pKa = 5.03FILVV210 pKa = 3.6

Molecular weight: 23.17 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A4S3MBZ8|A0A4S3MBZ8_9RHOB PLP-dependent aminotransferase family protein OS=Youngimonas vesicularis OX=1294297 GN=E7681_10705 PE=3 SV=1
MM1 pKa = 7.35KK2 pKa = 9.44RR3 pKa = 11.84TYY5 pKa = 10.31QPSNLVRR12 pKa = 11.84KK13 pKa = 9.18RR14 pKa = 11.84RR15 pKa = 11.84HH16 pKa = 4.42GFRR19 pKa = 11.84ARR21 pKa = 11.84MATKK25 pKa = 10.44AGRR28 pKa = 11.84KK29 pKa = 8.46VLNARR34 pKa = 11.84RR35 pKa = 11.84ARR37 pKa = 11.84GRR39 pKa = 11.84KK40 pKa = 9.07SLSAA44 pKa = 3.93

Molecular weight: 5.14 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

3652

0

3652

1143577

28

2246

313.1

34.02

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

12.148 ± 0.056

0.883 ± 0.013

5.991 ± 0.035

5.766 ± 0.039

3.668 ± 0.023

8.767 ± 0.049

2.083 ± 0.02

5.151 ± 0.029

3.447 ± 0.038

10.123 ± 0.047

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.893 ± 0.02

2.671 ± 0.023

5.056 ± 0.03

3.42 ± 0.021

6.529 ± 0.04

5.006 ± 0.028

5.453 ± 0.029

7.274 ± 0.032

1.392 ± 0.016

2.28 ± 0.021
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski