Pan troglodytes polyomavirus 5

Taxonomy: Viruses; Monodnaviria; Shotokuvirae; Cossaviricota; Papovaviricetes; Sepolyvirales; Polyomaviridae; Alphapolyomavirus

Average proteome isoelectric point is 6.08

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 4 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|K7QK02|K7QK02_9POLY Small T antigen OS=Pan troglodytes polyomavirus 5 OX=1891737 PE=4 SV=1
MM1 pKa = 7.48GGVISIIVDD10 pKa = 4.11IIEE13 pKa = 4.14LTAEE17 pKa = 4.17LTAATGFSVEE27 pKa = 4.42AIINGEE33 pKa = 3.69ALAAVEE39 pKa = 4.4AQLSSLATVEE49 pKa = 4.17GLTGVEE55 pKa = 4.21ALASLGITTEE65 pKa = 4.02QYY67 pKa = 11.46SFLTSVPGMLSNAVGLGVVFQTVSGASALVTAGIATSYY105 pKa = 10.37AKK107 pKa = 10.13EE108 pKa = 3.83VSVVNRR114 pKa = 11.84NMAVIPWRR122 pKa = 11.84DD123 pKa = 3.0PDD125 pKa = 3.8YY126 pKa = 11.55YY127 pKa = 11.05DD128 pKa = 3.18ILFPGVQSFSYY139 pKa = 10.51AIDD142 pKa = 4.31VITDD146 pKa = 3.33WSGSLFHH153 pKa = 7.47SIGRR157 pKa = 11.84YY158 pKa = 6.41IWEE161 pKa = 4.33SVTTEE166 pKa = 3.22ARR168 pKa = 11.84RR169 pKa = 11.84QIGHH173 pKa = 7.72ASNQVIVRR181 pKa = 11.84GTHH184 pKa = 6.59AFQDD188 pKa = 3.52TLARR192 pKa = 11.84ILEE195 pKa = 3.97NARR198 pKa = 11.84WVVQSGPTNVYY209 pKa = 10.52NYY211 pKa = 10.02LDD213 pKa = 3.31NYY215 pKa = 9.21YY216 pKa = 10.54RR217 pKa = 11.84QLPPVNPAQARR228 pKa = 11.84QMYY231 pKa = 9.67RR232 pKa = 11.84RR233 pKa = 11.84LGQKK237 pKa = 10.05YY238 pKa = 8.61RR239 pKa = 11.84VTRR242 pKa = 11.84DD243 pKa = 2.96AQIPDD248 pKa = 3.76RR249 pKa = 11.84YY250 pKa = 10.07NLEE253 pKa = 3.96SSEE256 pKa = 4.37TEE258 pKa = 3.6SGEE261 pKa = 4.01TVEE264 pKa = 5.56FYY266 pKa = 10.85KK267 pKa = 10.99HH268 pKa = 6.39PGGANQRR275 pKa = 11.84VTPDD279 pKa = 2.51WMLPLILGLYY289 pKa = 10.53GDD291 pKa = 4.96ITPTWDD297 pKa = 3.24KK298 pKa = 10.89YY299 pKa = 7.19VHH301 pKa = 5.46QVEE304 pKa = 5.23EE305 pKa = 3.81EE306 pKa = 4.08DD307 pKa = 4.09EE308 pKa = 4.32YY309 pKa = 11.36QKK311 pKa = 11.12KK312 pKa = 9.61KK313 pKa = 10.08RR314 pKa = 11.84RR315 pKa = 11.84RR316 pKa = 11.84VV317 pKa = 3.14

Molecular weight: 35.15 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|K7QKH4|K7QKH4_9POLY Large T antigen OS=Pan troglodytes polyomavirus 5 OX=1891737 PE=4 SV=1
MM1 pKa = 7.98DD2 pKa = 6.07KK3 pKa = 10.42ILHH6 pKa = 5.9KK7 pKa = 10.3SEE9 pKa = 3.97KK10 pKa = 10.05KK11 pKa = 10.3EE12 pKa = 4.08LIALLEE18 pKa = 4.3LPANEE23 pKa = 4.17YY24 pKa = 11.37GNYY27 pKa = 10.14PLMKK31 pKa = 9.9QQFKK35 pKa = 10.83KK36 pKa = 9.53MCLVYY41 pKa = 10.66HH42 pKa = 6.93PDD44 pKa = 3.32KK45 pKa = 11.54GGDD48 pKa = 3.64GEE50 pKa = 4.8KK51 pKa = 9.52MRR53 pKa = 11.84RR54 pKa = 11.84LNALWQTFNTEE65 pKa = 3.95LLEE68 pKa = 4.15MRR70 pKa = 11.84DD71 pKa = 3.36NRR73 pKa = 11.84FDD75 pKa = 3.59MEE77 pKa = 4.25QVRR80 pKa = 11.84NMDD83 pKa = 3.71LAIWEE88 pKa = 4.56DD89 pKa = 4.02LLTLKK94 pKa = 10.58EE95 pKa = 4.29VIDD98 pKa = 4.08NFDD101 pKa = 3.26EE102 pKa = 4.44VFIKK106 pKa = 9.93VFPSCFMRR114 pKa = 11.84VAVHH118 pKa = 6.03KK119 pKa = 8.59CKK121 pKa = 10.7CIVCMLRR128 pKa = 11.84QQHH131 pKa = 7.2LIMKK135 pKa = 6.63EE136 pKa = 3.87HH137 pKa = 6.45KK138 pKa = 10.13RR139 pKa = 11.84CVLWGEE145 pKa = 4.4CFCHH149 pKa = 6.77KK150 pKa = 10.44CYY152 pKa = 10.64LDD154 pKa = 3.26WYY156 pKa = 8.55GLSGIEE162 pKa = 5.17LHH164 pKa = 6.75LIWWKK169 pKa = 10.62RR170 pKa = 11.84IVQNTPFIFMRR181 pKa = 11.84VNVEE185 pKa = 3.87DD186 pKa = 5.07LYY188 pKa = 11.35HH189 pKa = 6.21KK190 pKa = 10.94RR191 pKa = 11.84NMM193 pKa = 3.91

Molecular weight: 23.39 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

4

0

4

1626

193

733

406.5

46.03

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

5.781 ± 0.741

2.583 ± 0.624

5.535 ± 0.295

6.704 ± 0.357

4.49 ± 0.682

5.535 ± 0.936

1.845 ± 0.362

5.105 ± 0.469

7.134 ± 1.199

9.102 ± 0.549

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

3.014 ± 0.48

4.92 ± 0.295

5.474 ± 0.674

4.059 ± 0.291

4.551 ± 0.453

7.011 ± 0.839

5.843 ± 0.903

6.396 ± 1.161

1.292 ± 0.353

3.629 ± 0.439
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski