Arachidicoccus soli

Taxonomy: cellular organisms; Bacteria; FCB group; Bacteroidetes/Chlorobi group; Bacteroidetes; Chitinophagia; Chitinophagales; Chitinophagaceae; Arachidicoccus

Average proteome isoelectric point is 7.02

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 3298 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A386HLF8|A0A386HLF8_9BACT ThuA domain-containing protein OS=Arachidicoccus soli OX=2341117 GN=D6B99_01790 PE=4 SV=1
MM1 pKa = 7.83ADD3 pKa = 3.56YY4 pKa = 11.27NGLNLGGINGNHH16 pKa = 5.98NSINTGTNGQFSMFIIPNSAISTGGQSLTQSQIDD50 pKa = 3.75DD51 pKa = 4.0AGLSLVQANPGVFQQ65 pKa = 4.15

Molecular weight: 6.67 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A386HU39|A0A386HU39_9BACT Alpha-mannosidase OS=Arachidicoccus soli OX=2341117 GN=D6B99_15765 PE=3 SV=1
MM1 pKa = 7.15QFLGGHH7 pKa = 5.57VDD9 pKa = 3.74DD10 pKa = 6.35LIVLVVFIYY19 pKa = 10.43LFLMVRR25 pKa = 11.84RR26 pKa = 11.84KK27 pKa = 10.27VSLSTQRR34 pKa = 11.84QAKK37 pKa = 9.67FEE39 pKa = 4.11NFMQQKK45 pKa = 8.8RR46 pKa = 11.84GKK48 pKa = 8.31FFRR51 pKa = 11.84IVVYY55 pKa = 10.83AGTALFAFIVLADD68 pKa = 3.46IMGWRR73 pKa = 11.84QQ74 pKa = 2.75

Molecular weight: 8.7 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

3298

0

3298

1183952

25

2900

359.0

40.46

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

6.988 ± 0.035

0.877 ± 0.012

5.185 ± 0.027

5.589 ± 0.044

5.018 ± 0.027

6.615 ± 0.036

1.947 ± 0.017

7.851 ± 0.039

7.562 ± 0.035

9.238 ± 0.044

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.323 ± 0.02

6.305 ± 0.046

3.715 ± 0.024

3.827 ± 0.026

3.59 ± 0.025

6.508 ± 0.034

5.522 ± 0.027

5.741 ± 0.033

1.342 ± 0.019

4.26 ± 0.032
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski