Lymphocystis disease virus Sa

Taxonomy: Viruses; Varidnaviria; Bamfordvirae; Nucleocytoviricota; Megaviricetes; Pimascovirales; Iridoviridae; Alphairidovirinae; Lymphocystivirus; unclassified Lymphocystivirus

Average proteome isoelectric point is 7.59

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 183 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A1B2RVT8|A0A1B2RVT8_9VIRU Uncharacterized protein OS=Lymphocystis disease virus Sa OX=1898060 GN=LCDVSa028R PE=4 SV=1
MM1 pKa = 7.64FSTSYY6 pKa = 10.6QPPQFVNLNQPPPPEE21 pKa = 4.31PKK23 pKa = 9.92KK24 pKa = 10.77EE25 pKa = 3.94MSKK28 pKa = 10.51SKK30 pKa = 10.28PISEE34 pKa = 4.73PYY36 pKa = 10.46AFGYY40 pKa = 9.94LPPSVEE46 pKa = 3.91DD47 pKa = 3.51DD48 pKa = 3.99VVVEE52 pKa = 4.4EE53 pKa = 4.42PLEE56 pKa = 4.1EE57 pKa = 4.27SEE59 pKa = 5.17EE60 pKa = 4.19EE61 pKa = 3.53IDD63 pKa = 4.62YY64 pKa = 11.4GDD66 pKa = 4.25EE67 pKa = 4.23EE68 pKa = 4.49PVLTEE73 pKa = 3.6EE74 pKa = 4.45GNIVFDD80 pKa = 3.88EE81 pKa = 4.59DD82 pKa = 3.49VDD84 pKa = 4.27EE85 pKa = 4.75EE86 pKa = 4.51EE87 pKa = 4.89EE88 pKa = 4.27DD89 pKa = 3.7EE90 pKa = 4.6KK91 pKa = 11.56LQTVEE96 pKa = 5.27DD97 pKa = 3.89KK98 pKa = 10.08THH100 pKa = 6.27VYY102 pKa = 10.66LFLEE106 pKa = 4.98DD107 pKa = 3.52YY108 pKa = 11.22SNRR111 pKa = 11.84EE112 pKa = 3.52NSLLPFVAMLNPVEE126 pKa = 3.9QWNIIKK132 pKa = 10.41KK133 pKa = 10.4ALFTGFTKK141 pKa = 10.38VDD143 pKa = 3.63GLEE146 pKa = 4.13KK147 pKa = 10.92VADD150 pKa = 4.01KK151 pKa = 10.84YY152 pKa = 11.26IKK154 pKa = 10.5LVADD158 pKa = 5.37AILINRR164 pKa = 11.84DD165 pKa = 3.4QIEE168 pKa = 4.28DD169 pKa = 4.08HH170 pKa = 6.05PTSYY174 pKa = 11.49YY175 pKa = 9.81FLSYY179 pKa = 10.68AKK181 pKa = 10.43SRR183 pKa = 11.84GLVV186 pKa = 3.14

Molecular weight: 21.42 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A1B2RW49|A0A1B2RW49_9VIRU Uncharacterized protein OS=Lymphocystis disease virus Sa OX=1898060 GN=LCDVSa122R PE=4 SV=1
MM1 pKa = 7.42NATSIPNTSLVYY13 pKa = 10.97GEE15 pKa = 4.97VNFLTLNHH23 pKa = 6.3SRR25 pKa = 11.84TIAFIQRR32 pKa = 11.84RR33 pKa = 11.84CWQSPLNVLNKK44 pKa = 9.29RR45 pKa = 11.84QFIIRR50 pKa = 11.84IPSSLRR56 pKa = 11.84INFLKK61 pKa = 10.09TKK63 pKa = 9.8NLHH66 pKa = 5.89RR67 pKa = 11.84FNLLRR72 pKa = 11.84IVRR75 pKa = 11.84FNTLRR80 pKa = 11.84LPLEE84 pKa = 4.22YY85 pKa = 10.76VSVNRR90 pKa = 11.84PSFYY94 pKa = 11.02YY95 pKa = 10.34LFSMEE100 pKa = 5.42LNLLTLKK107 pKa = 10.42YY108 pKa = 10.51IKK110 pKa = 10.1IVEE113 pKa = 4.16NKK115 pKa = 9.96LICLYY120 pKa = 10.92SGILTLIPCIINAVNSSDD138 pKa = 4.4ANTSSS143 pKa = 3.1

Molecular weight: 16.63 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

183

0

183

43300

34

1183

236.6

27.33

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

4.413 ± 0.142

2.39 ± 0.114

5.744 ± 0.155

6.111 ± 0.199

5.543 ± 0.158

4.187 ± 0.266

1.564 ± 0.079

7.298 ± 0.162

9.561 ± 0.232

10.321 ± 0.175

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

1.778 ± 0.075

5.478 ± 0.147

3.912 ± 0.197

2.751 ± 0.091

4.321 ± 0.128

6.314 ± 0.147

5.587 ± 0.176

6.797 ± 0.161

0.952 ± 0.06

4.979 ± 0.171
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski