Durio zibethinus (Durian)

Taxonomy: cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliopsida; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Helicteroideae; Durio

Average proteome isoelectric point is 6.68

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 53026 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A6P5XK65|A0A6P5XK65_DURZI benzyl alcohol O-benzoyltransferase-like OS=Durio zibethinus OX=66656 GN=LOC111284102 PE=3 SV=1
MM1 pKa = 7.88PKK3 pKa = 10.39FNFPTILILAILLLACEE20 pKa = 4.48LAIISPVLAYY30 pKa = 10.88NDD32 pKa = 3.39VDD34 pKa = 4.01IGDD37 pKa = 4.27ISPSAVTDD45 pKa = 3.57DD46 pKa = 5.56DD47 pKa = 4.92MITSSSLDD55 pKa = 3.31AGQLEE60 pKa = 4.51DD61 pKa = 4.52LYY63 pKa = 10.89QRR65 pKa = 11.84CVVMLGDD72 pKa = 3.6EE73 pKa = 4.62CGDD76 pKa = 3.97EE77 pKa = 4.08IFDD80 pKa = 5.49LIFRR84 pKa = 11.84NDD86 pKa = 3.32SLIVTDD92 pKa = 4.7KK93 pKa = 11.35DD94 pKa = 2.86IGLVSKK100 pKa = 8.89YY101 pKa = 10.88CCDD104 pKa = 3.21KK105 pKa = 10.64LLNMGRR111 pKa = 11.84NCHH114 pKa = 6.01DD115 pKa = 3.19QLVNVIAQTTHH126 pKa = 6.53FSTNSSATVPRR137 pKa = 11.84SSQVWDD143 pKa = 3.69LCSLSSSS150 pKa = 3.53

Molecular weight: 16.4 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A6P5ZWJ5|A0A6P5ZWJ5_DURZI Peptidyl-prolyl cis-trans isomerase OS=Durio zibethinus OX=66656 GN=LOC111304638 PE=3 SV=1
MM1 pKa = 6.7YY2 pKa = 10.1HH3 pKa = 6.64SLRR6 pKa = 11.84SQSLSPRR13 pKa = 11.84SCFPARR19 pKa = 11.84RR20 pKa = 11.84RR21 pKa = 11.84PSYY24 pKa = 10.1SRR26 pKa = 11.84QRR28 pKa = 11.84SRR30 pKa = 11.84SHH32 pKa = 5.84SLSRR36 pKa = 11.84SPSPVRR42 pKa = 11.84RR43 pKa = 11.84RR44 pKa = 11.84LRR46 pKa = 11.84SPYY49 pKa = 9.74QRR51 pKa = 11.84WSPTLVRR58 pKa = 11.84RR59 pKa = 11.84RR60 pKa = 11.84YY61 pKa = 9.42LSPICRR67 pKa = 11.84HH68 pKa = 6.2RR69 pKa = 11.84SPLSIRR75 pKa = 11.84RR76 pKa = 11.84RR77 pKa = 11.84RR78 pKa = 11.84SSSLVRR84 pKa = 11.84RR85 pKa = 11.84HH86 pKa = 6.21RR87 pKa = 11.84SPSTVFRR94 pKa = 11.84RR95 pKa = 11.84SSSPVRR101 pKa = 11.84RR102 pKa = 11.84RR103 pKa = 11.84SASSVCRR110 pKa = 11.84RR111 pKa = 11.84SPLPMCRR118 pKa = 11.84RR119 pKa = 11.84SPSPLRR125 pKa = 11.84HH126 pKa = 6.35RR127 pKa = 11.84SPHH130 pKa = 4.11MQRR133 pKa = 11.84RR134 pKa = 11.84SPSSVRR140 pKa = 11.84QRR142 pKa = 11.84HH143 pKa = 5.51HH144 pKa = 6.95RR145 pKa = 11.84LSSTPRR151 pKa = 11.84HH152 pKa = 5.86RR153 pKa = 11.84SSSLVRR159 pKa = 11.84RR160 pKa = 11.84RR161 pKa = 11.84SPGSNRR167 pKa = 11.84RR168 pKa = 11.84SITPSHH174 pKa = 6.23GKK176 pKa = 9.56SLSLYY181 pKa = 8.9QSCSLSPVQHH191 pKa = 6.7RR192 pKa = 11.84SSSPLKK198 pKa = 10.41RR199 pKa = 11.84SPKK202 pKa = 10.17DD203 pKa = 3.09

Molecular weight: 23.85 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

35616

17410

53026

26388952

31

5460

497.7

55.54

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

6.651 ± 0.008

1.882 ± 0.005

5.28 ± 0.007

6.555 ± 0.012

4.217 ± 0.006

6.406 ± 0.01

2.371 ± 0.004

5.349 ± 0.008

6.135 ± 0.01

9.934 ± 0.015

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.382 ± 0.003

4.574 ± 0.007

4.835 ± 0.009

3.881 ± 0.008

5.209 ± 0.008

9.231 ± 0.012

4.736 ± 0.006

6.386 ± 0.007

1.245 ± 0.003

2.738 ± 0.005
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski