Lepeophtheirus salmonis rhabdovirus 127

Taxonomy: Viruses; Riboviria; Orthornavirae; Negarnaviricota; Haploviricotina; Monjiviricetes; Mononegavirales; Rhabdoviridae; Alpharhabdovirinae; Caligrhavirus; Lepeophtheirus caligrhavirus

Average proteome isoelectric point is 6.57

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 5 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A0A1EBK8|A0A0A1EBK8_9RHAB GDP polyribonucleotidyltransferase OS=Lepeophtheirus salmonis rhabdovirus 127 OX=1573761 PE=4 SV=1
MM1 pKa = 6.7SQKK4 pKa = 10.08VSNVGAILDD13 pKa = 4.03KK14 pKa = 10.64GVSMVRR20 pKa = 11.84AEE22 pKa = 3.95GRR24 pKa = 11.84RR25 pKa = 11.84AVEE28 pKa = 4.27DD29 pKa = 3.89LGEE32 pKa = 4.15EE33 pKa = 4.42SPDD36 pKa = 3.09EE37 pKa = 5.09DD38 pKa = 4.11YY39 pKa = 11.35QEE41 pKa = 4.69HH42 pKa = 6.49PKK44 pKa = 10.73KK45 pKa = 10.34PFSSTFGTWHH55 pKa = 6.3QKK57 pKa = 8.47FQEE60 pKa = 5.08DD61 pKa = 3.59INDD64 pKa = 3.43WGEE67 pKa = 3.63QRR69 pKa = 11.84EE70 pKa = 4.4IQGLDD75 pKa = 3.14PEE77 pKa = 4.56PRR79 pKa = 11.84STYY82 pKa = 10.94EE83 pKa = 3.66MLRR86 pKa = 11.84DD87 pKa = 3.71PGEE90 pKa = 4.41EE91 pKa = 3.58INIYY95 pKa = 10.23PDD97 pKa = 3.38TDD99 pKa = 3.78LSNMGSQGPEE109 pKa = 3.71VCDD112 pKa = 3.63LQDD115 pKa = 3.18FRR117 pKa = 11.84TVLDD121 pKa = 4.97EE122 pKa = 4.02ISLRR126 pKa = 11.84YY127 pKa = 9.51NIPRR131 pKa = 11.84LIIKK135 pKa = 9.84RR136 pKa = 11.84DD137 pKa = 3.23AGRR140 pKa = 11.84ITWGEE145 pKa = 3.87AGTGEE150 pKa = 4.36EE151 pKa = 4.33PKK153 pKa = 10.27IPQDD157 pKa = 3.27VHH159 pKa = 7.79LVEE162 pKa = 5.22EE163 pKa = 4.81INVKK167 pKa = 10.34PSIGYY172 pKa = 7.41PKK174 pKa = 10.2KK175 pKa = 9.94PKK177 pKa = 10.46ASINEE182 pKa = 4.01TRR184 pKa = 11.84EE185 pKa = 4.05RR186 pKa = 11.84NSLEE190 pKa = 3.42MALIEE195 pKa = 4.68KK196 pKa = 9.8RR197 pKa = 11.84YY198 pKa = 9.33HH199 pKa = 5.51VLGIFDD205 pKa = 3.83RR206 pKa = 11.84TKK208 pKa = 10.65KK209 pKa = 10.42LSLGIPPIQGVNRR222 pKa = 11.84LLADD226 pKa = 3.14IWGEE230 pKa = 4.08EE231 pKa = 3.98KK232 pKa = 11.18AMDD235 pKa = 3.97DD236 pKa = 4.47MIRR239 pKa = 11.84EE240 pKa = 5.01LYY242 pKa = 9.58RR243 pKa = 11.84HH244 pKa = 6.24HH245 pKa = 7.29PNMRR249 pKa = 11.84RR250 pKa = 11.84LSRR253 pKa = 11.84SFNFKK258 pKa = 10.47FIQEE262 pKa = 4.23SS263 pKa = 3.44

Molecular weight: 30.34 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A0A1E924|A0A0A1E924_9RHAB Phosphoprotein OS=Lepeophtheirus salmonis rhabdovirus 127 OX=1573761 PE=4 SV=1
MM1 pKa = 7.23LRR3 pKa = 11.84KK4 pKa = 9.28AALALRR10 pKa = 11.84GGNKK14 pKa = 10.01EE15 pKa = 3.92EE16 pKa = 4.63DD17 pKa = 3.4RR18 pKa = 11.84HH19 pKa = 6.28PVTSWSSPIQSPSAPMDD36 pKa = 3.57SRR38 pKa = 11.84LLTVNLKK45 pKa = 8.37VTAHH49 pKa = 5.46MSVRR53 pKa = 11.84TTNKK57 pKa = 9.82NIVFSDD63 pKa = 3.58VLLACTDD70 pKa = 3.09IMDD73 pKa = 4.36TYY75 pKa = 10.45DD76 pKa = 4.46GPMEE80 pKa = 4.01TLGFYY85 pKa = 10.14WIMILVLVKK94 pKa = 10.36RR95 pKa = 11.84LKK97 pKa = 10.44SLRR100 pKa = 11.84GNEE103 pKa = 3.9GTQDD107 pKa = 3.58FVSSVSEE114 pKa = 4.31PISFLTDD121 pKa = 3.13ISSPYY126 pKa = 10.71LKK128 pKa = 9.76TFPTTAFSFGRR139 pKa = 11.84EE140 pKa = 3.69FRR142 pKa = 11.84AGKK145 pKa = 10.24VSGNASVSFSEE156 pKa = 4.35TRR158 pKa = 11.84AVTTSLEE165 pKa = 4.81LILQSLGLVNDD176 pKa = 4.32HH177 pKa = 6.86LGSALSALKK186 pKa = 10.43IPAEE190 pKa = 4.3RR191 pKa = 11.84IKK193 pKa = 10.98GSLVIHH199 pKa = 6.13MALRR203 pKa = 11.84DD204 pKa = 4.16SFSHH208 pKa = 6.19IQPATLKK215 pKa = 8.32EE216 pKa = 4.23TSDD219 pKa = 3.41

Molecular weight: 23.98 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

5

0

5

3586

219

2096

717.2

82.0

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

4.183 ± 0.533

1.422 ± 0.382

6.191 ± 0.119

6.219 ± 0.38

4.406 ± 0.151

5.8 ± 0.199

2.566 ± 0.254

6.804 ± 0.199

6.219 ± 0.566

10.318 ± 0.674

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.566 ± 0.12

4.044 ± 0.185

4.713 ± 0.508

2.817 ± 0.146

6.414 ± 0.397

8.645 ± 0.411

6.079 ± 0.452

5.577 ± 0.407

2.091 ± 0.185

2.928 ± 0.279
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski