Zymomonas sp.

Taxonomy: cellular organisms; Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Zymomonadaceae; Zymomonas; unclassified Zymomonas

Average proteome isoelectric point is 6.39

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 1056 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A519E6Z4|A0A519E6Z4_9SPHN Coproporphyrinogen III oxidase (Fragment) OS=Zymomonas sp. OX=2068624 GN=EOP94_02850 PE=4 SV=1
MM1 pKa = 8.88IMEE4 pKa = 4.15QPADD8 pKa = 3.88YY9 pKa = 11.36DD10 pKa = 3.48HH11 pKa = 7.3LLQHH15 pKa = 6.55AQRR18 pKa = 11.84LFPGAQVDD26 pKa = 3.36ITYY29 pKa = 9.78TEE31 pKa = 4.7DD32 pKa = 3.56EE33 pKa = 4.96IIHH36 pKa = 6.54IDD38 pKa = 3.61VDD40 pKa = 3.11GHH42 pKa = 6.73RR43 pKa = 11.84YY44 pKa = 6.73TFEE47 pKa = 4.84IGSDD51 pKa = 3.24DD52 pKa = 4.19DD53 pKa = 5.33EE54 pKa = 5.03YY55 pKa = 11.95VFDD58 pKa = 5.67DD59 pKa = 4.25RR60 pKa = 11.84STCFSIPLFLDD71 pKa = 3.43ATWDD75 pKa = 3.95FSS77 pKa = 3.9

Molecular weight: 9.03 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A519ED50|A0A519ED50_9SPHN ParB/RepB/Spo0J family partition protein OS=Zymomonas sp. OX=2068624 GN=EOP94_00420 PE=3 SV=1
MM1 pKa = 7.24MGLEE5 pKa = 4.08GRR7 pKa = 11.84IAQLKK12 pKa = 5.55PTSVGGHH19 pKa = 3.76VTGYY23 pKa = 10.44LVLGGTSRR31 pKa = 11.84GFAFGGPEE39 pKa = 3.87FFLDD43 pKa = 3.98LDD45 pKa = 4.4RR46 pKa = 11.84FPSRR50 pKa = 11.84PWLSRR55 pKa = 11.84SCSMSCSARR64 pKa = 11.84FRR66 pKa = 11.84ASPRR70 pKa = 11.84HH71 pKa = 5.72RR72 pKa = 11.84RR73 pKa = 11.84LDD75 pKa = 3.73PLGLRR80 pKa = 11.84HH81 pKa = 6.29GARR84 pKa = 11.84HH85 pKa = 5.93RR86 pKa = 11.84CRR88 pKa = 11.84EE89 pKa = 3.97GAGAIADD96 pKa = 3.89LTGEE100 pKa = 4.19PGALFVQRR108 pKa = 11.84YY109 pKa = 8.98RR110 pKa = 11.84NLKK113 pKa = 10.54SYY115 pKa = 10.26GKK117 pKa = 10.27SNAVPLLKK125 pKa = 10.68AEE127 pKa = 4.84TIRR130 pKa = 11.84SGEE133 pKa = 3.93QLAACAAA140 pKa = 4.02

Molecular weight: 15.16 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

1056

0

1056

225047

25

988

213.1

23.33

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

11.494 ± 0.097

0.874 ± 0.028

6.085 ± 0.056

5.784 ± 0.065

3.811 ± 0.055

8.017 ± 0.082

2.123 ± 0.043

5.269 ± 0.056

3.297 ± 0.065

9.912 ± 0.091

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.515 ± 0.043

2.774 ± 0.055

4.871 ± 0.054

3.284 ± 0.044

7.381 ± 0.085

5.947 ± 0.06

5.502 ± 0.068

7.309 ± 0.068

1.352 ± 0.033

2.401 ± 0.044
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski