Vibrio mangrovi

Taxonomy: cellular organisms; Bacteria; Proteobacteria; Gammaproteobacteria; Vibrionales; Vibrionaceae; Vibrio

Average proteome isoelectric point is 6.1

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 4312 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A1Y6IPN4|A0A1Y6IPN4_9VIBR Autoinducer 2-binding periplasmic protein LuxP OS=Vibrio mangrovi OX=474394 GN=lsrB PE=4 SV=1
MM1 pKa = 7.65KK2 pKa = 8.99KK3 pKa = 8.31TLIALAVLAAGSASAAEE20 pKa = 5.09IYY22 pKa = 10.35NQDD25 pKa = 3.09GVAVTVAGAGEE36 pKa = 4.23VQLMQAYY43 pKa = 8.26EE44 pKa = 3.89QDD46 pKa = 3.72GTDD49 pKa = 2.76VSTKK53 pKa = 10.57LRR55 pKa = 11.84IDD57 pKa = 3.97DD58 pKa = 3.93MQLNTHH64 pKa = 5.6GTIEE68 pKa = 4.2VAEE71 pKa = 4.36GLSAVVGLDD80 pKa = 3.24FTFEE84 pKa = 4.78DD85 pKa = 4.91DD86 pKa = 4.02SSASKK91 pKa = 11.35GNVQTDD97 pKa = 3.33GSYY100 pKa = 11.16VGFAYY105 pKa = 9.64TDD107 pKa = 3.55YY108 pKa = 9.86GTITYY113 pKa = 9.06GRR115 pKa = 11.84QYY117 pKa = 11.1LITDD121 pKa = 3.79DD122 pKa = 4.25SGIGADD128 pKa = 4.88FEE130 pKa = 4.76TGKK133 pKa = 9.59NQYY136 pKa = 9.25GQEE139 pKa = 4.15TTVGKK144 pKa = 10.26DD145 pKa = 3.15VIKK148 pKa = 10.68YY149 pKa = 10.18VYY151 pKa = 10.78DD152 pKa = 3.29NGTFYY157 pKa = 11.07FGLSHH162 pKa = 7.54DD163 pKa = 4.41LDD165 pKa = 3.93EE166 pKa = 6.31SEE168 pKa = 4.6GTTIDD173 pKa = 3.26ATSTDD178 pKa = 2.86GRR180 pKa = 11.84IGFRR184 pKa = 11.84YY185 pKa = 9.62EE186 pKa = 3.74GLDD189 pKa = 3.2ARR191 pKa = 11.84LYY193 pKa = 10.14IYY195 pKa = 10.89SGDD198 pKa = 3.94DD199 pKa = 3.18VDD201 pKa = 4.79ISSTATGDD209 pKa = 3.31EE210 pKa = 4.27DD211 pKa = 4.5SFNLEE216 pKa = 3.4VTYY219 pKa = 11.0EE220 pKa = 3.68MDD222 pKa = 3.42AFNFGASYY230 pKa = 10.57GQTEE234 pKa = 4.26QDD236 pKa = 2.86NTAGVEE242 pKa = 4.13VTDD245 pKa = 3.96RR246 pKa = 11.84DD247 pKa = 3.66IIEE250 pKa = 4.5LVGSYY255 pKa = 10.29TMDD258 pKa = 2.85KK259 pKa = 8.34TTFSLGYY266 pKa = 9.11VHH268 pKa = 6.95NDD270 pKa = 3.17DD271 pKa = 4.04NTSVSNDD278 pKa = 2.59GDD280 pKa = 3.54NLYY283 pKa = 11.18GVVVYY288 pKa = 10.69KK289 pKa = 10.36MNANVRR295 pKa = 11.84TYY297 pKa = 11.45AEE299 pKa = 3.95VGFYY303 pKa = 10.83DD304 pKa = 4.68DD305 pKa = 6.16DD306 pKa = 4.6SNKK309 pKa = 10.73DD310 pKa = 3.25YY311 pKa = 11.53DD312 pKa = 3.7PAYY315 pKa = 8.79TLGMEE320 pKa = 4.52VKK322 pKa = 10.57FF323 pKa = 4.41

Molecular weight: 35.06 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A1Y6IYJ9|A0A1Y6IYJ9_9VIBR Uncharacterized protein OS=Vibrio mangrovi OX=474394 GN=VIM7927_04064 PE=4 SV=1
MM1 pKa = 7.45KK2 pKa = 9.5RR3 pKa = 11.84TFQPTVLKK11 pKa = 10.46RR12 pKa = 11.84KK13 pKa = 7.65RR14 pKa = 11.84THH16 pKa = 5.89GFRR19 pKa = 11.84ARR21 pKa = 11.84MATKK25 pKa = 10.45NGRR28 pKa = 11.84KK29 pKa = 9.19VLNARR34 pKa = 11.84RR35 pKa = 11.84AKK37 pKa = 10.26GRR39 pKa = 11.84ARR41 pKa = 11.84LSKK44 pKa = 10.83

Molecular weight: 5.18 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

4312

0

4312

1428354

29

4679

331.3

36.93

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

8.251 ± 0.036

1.126 ± 0.016

5.386 ± 0.036

6.237 ± 0.038

4.025 ± 0.027

6.831 ± 0.034

2.557 ± 0.02

6.573 ± 0.04

4.672 ± 0.041

10.315 ± 0.05

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.654 ± 0.02

3.881 ± 0.026

4.096 ± 0.025

5.022 ± 0.032

4.935 ± 0.032

6.713 ± 0.031

5.374 ± 0.042

6.854 ± 0.029

1.262 ± 0.016

3.235 ± 0.024
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski