Defluviimonas alba

Taxonomy: cellular organisms; Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Defluviimonas

Average proteome isoelectric point is 6.62

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 5035 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A159Z2E0|A0A159Z2E0_9RHOB Uncharacterized protein OS=Defluviimonas alba OX=1335048 GN=AKL17_1892 PE=4 SV=1
MM1 pKa = 7.71SSRR4 pKa = 11.84FLLPLAVAGAFCAASVLPAAALDD27 pKa = 3.44RR28 pKa = 11.84HH29 pKa = 5.35VRR31 pKa = 11.84IVNDD35 pKa = 3.22TGFAIVEE42 pKa = 5.02FYY44 pKa = 11.31ASNTGTSDD52 pKa = 2.88WQEE55 pKa = 4.79DD56 pKa = 3.58ILGPDD61 pKa = 3.84VLPSGASVMINIDD74 pKa = 4.5DD75 pKa = 3.74GTGYY79 pKa = 10.68CKK81 pKa = 10.55YY82 pKa = 10.8DD83 pKa = 3.64LLAVFEE89 pKa = 5.99DD90 pKa = 4.11GDD92 pKa = 3.9QLVKK96 pKa = 10.77SDD98 pKa = 3.92VNVCEE103 pKa = 4.43VGTFTYY109 pKa = 10.96NN110 pKa = 2.81

Molecular weight: 11.73 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A161HCN6|A0A161HCN6_9RHOB GntR family transcriptional regulator OS=Defluviimonas alba OX=1335048 GN=AKL17_3625 PE=4 SV=1
MM1 pKa = 7.49HH2 pKa = 7.64PASLVIATAALALLAALSLAANRR25 pKa = 11.84RR26 pKa = 11.84LRR28 pKa = 11.84HH29 pKa = 5.77LGRR32 pKa = 11.84LPMHH36 pKa = 7.08WGLAGQVTWTAPRR49 pKa = 11.84PLALALVPILAAIMLLASALSGAPPLMTALMALALIAAHH88 pKa = 7.32LAHH91 pKa = 6.99LWLIRR96 pKa = 11.84RR97 pKa = 11.84TALRR101 pKa = 11.84GTPP104 pKa = 3.35

Molecular weight: 10.9 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

5035

0

5035

1461988

30

4091

290.4

31.25

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

13.877 ± 0.057

0.902 ± 0.012

5.449 ± 0.033

5.516 ± 0.034

3.511 ± 0.023

9.161 ± 0.056

2.024 ± 0.019

4.768 ± 0.024

2.547 ± 0.027

10.517 ± 0.042

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.696 ± 0.017

2.157 ± 0.018

5.573 ± 0.029

3.056 ± 0.018

7.444 ± 0.039

4.882 ± 0.025

5.237 ± 0.029

7.233 ± 0.031

1.432 ± 0.016

2.019 ± 0.018
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski