Atopostipes suicloacalis DSM 15692

Taxonomy: cellular organisms; Bacteria; Terrabacteria group; Firmicutes; Bacilli; Lactobacillales; Carnobacteriaceae; Atopostipes; Atopostipes suicloacalis

Average proteome isoelectric point is 5.78

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 1926 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A1M4ZPY5|A0A1M4ZPY5_9LACT Putative pre-16S rRNA nuclease OS=Atopostipes suicloacalis DSM 15692 OX=1121025 GN=SAMN02745249_02017 PE=3 SV=1
MM1 pKa = 7.43KK2 pKa = 10.3KK3 pKa = 10.28IIALLSLTLMSIFILTSCGTNNLGEE28 pKa = 4.03EE29 pKa = 4.28SPYY32 pKa = 11.37GEE34 pKa = 5.06DD35 pKa = 3.48VNNLDD40 pKa = 4.09GVSIEE45 pKa = 4.52LNKK48 pKa = 9.71DD49 pKa = 3.23TYY51 pKa = 11.02KK52 pKa = 10.87PEE54 pKa = 4.31GDD56 pKa = 3.21IFEE59 pKa = 4.53LTVINDD65 pKa = 3.56SEE67 pKa = 4.11EE68 pKa = 4.64DD69 pKa = 3.03ISYY72 pKa = 10.21GVPYY76 pKa = 9.45TLEE79 pKa = 3.99YY80 pKa = 10.62YY81 pKa = 10.3KK82 pKa = 10.5EE83 pKa = 4.31DD84 pKa = 2.47KK85 pKa = 10.02WYY87 pKa = 10.19EE88 pKa = 3.9VEE90 pKa = 4.27PDD92 pKa = 3.39NEE94 pKa = 4.19IGFVLILYY102 pKa = 7.33TLSPGDD108 pKa = 3.67EE109 pKa = 4.35ASDD112 pKa = 4.05EE113 pKa = 4.43INLDD117 pKa = 3.31SYY119 pKa = 11.71EE120 pKa = 4.02PLEE123 pKa = 4.14TGRR126 pKa = 11.84YY127 pKa = 8.41RR128 pKa = 11.84VLRR131 pKa = 11.84QIGDD135 pKa = 3.52EE136 pKa = 4.08TLTTEE141 pKa = 4.5FEE143 pKa = 4.49VAEE146 pKa = 4.27EE147 pKa = 4.05

Molecular weight: 16.71 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A1M4X6A2|A0A1M4X6A2_9LACT Transporter CPA2 family OS=Atopostipes suicloacalis DSM 15692 OX=1121025 GN=SAMN02745249_01361 PE=4 SV=1
MM1 pKa = 7.7SEE3 pKa = 3.98GLTYY7 pKa = 10.24QPKK10 pKa = 8.89KK11 pKa = 9.86RR12 pKa = 11.84KK13 pKa = 8.77RR14 pKa = 11.84KK15 pKa = 8.77KK16 pKa = 8.39VHH18 pKa = 5.58GFRR21 pKa = 11.84KK22 pKa = 10.01RR23 pKa = 11.84MSTKK27 pKa = 9.72NGRR30 pKa = 11.84RR31 pKa = 11.84VLKK34 pKa = 9.89NRR36 pKa = 11.84RR37 pKa = 11.84RR38 pKa = 11.84KK39 pKa = 8.51GRR41 pKa = 11.84KK42 pKa = 9.05RR43 pKa = 11.84LTHH46 pKa = 6.22

Molecular weight: 5.69 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

1926

0

1926

597593

41

2167

310.3

35.04

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

6.447 ± 0.053

0.404 ± 0.012

5.849 ± 0.058

8.643 ± 0.065

4.482 ± 0.047

6.415 ± 0.054

1.907 ± 0.023

8.034 ± 0.055

6.517 ± 0.055

9.625 ± 0.061

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.581 ± 0.023

5.049 ± 0.043

3.368 ± 0.028

3.786 ± 0.038

3.891 ± 0.042

5.924 ± 0.037

5.681 ± 0.035

6.658 ± 0.046

0.869 ± 0.018

3.871 ± 0.035
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski