Marmoricola ginsengisoli

Taxonomy: cellular organisms; Bacteria; Terrabacteria group; Actinobacteria; Actinomycetia; Propionibacteriales; Nocardioidaceae; Marmoricola

Average proteome isoelectric point is 5.97

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 4237 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A3N0CN65|A0A3N0CN65_9ACTN Superoxide dismutase OS=Marmoricola ginsengisoli OX=661483 GN=EFK50_02655 PE=3 SV=1
MM1 pKa = 7.8PGLPGLPGAPGTNGTNGNSLLNGAGAPDD29 pKa = 3.62SALGSNGDD37 pKa = 3.78YY38 pKa = 11.26YY39 pKa = 11.6LDD41 pKa = 3.62TAASEE46 pKa = 4.65LYY48 pKa = 10.43GPKK51 pKa = 10.33AGGAWPGSGVVLKK64 pKa = 10.92GADD67 pKa = 3.71GTNGTDD73 pKa = 3.83GAPGAAGPQGPVGPPGADD91 pKa = 3.25GTDD94 pKa = 3.6GTDD97 pKa = 3.55GADD100 pKa = 3.65GADD103 pKa = 3.47GAGTIFAASSGAAPAVATTVLGGLAGTGAALPLSGAFVEE142 pKa = 4.71NGVTLTGGTIDD153 pKa = 3.68STSLGVPQVFPRR165 pKa = 11.84DD166 pKa = 3.7GTVTAVTGRR175 pKa = 11.84AVLSNALSLIGTTVTLQAQLYY196 pKa = 7.17TSSSGGTTMTPVPGTQCILTPALTGVLTIGTVLDD230 pKa = 4.18CSVTGLSIPVTQGTNAMMVVTATAAGISLVNTVTARR266 pKa = 11.84LATSVAVSS274 pKa = 3.32

Molecular weight: 25.67 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A3N0CFN0|A0A3N0CFN0_9ACTN Glutaredoxin family protein OS=Marmoricola ginsengisoli OX=661483 GN=EFK50_10825 PE=4 SV=1
MM1 pKa = 7.4GSVIKK6 pKa = 10.42KK7 pKa = 8.47RR8 pKa = 11.84RR9 pKa = 11.84KK10 pKa = 9.22RR11 pKa = 11.84MAKK14 pKa = 9.41KK15 pKa = 9.99KK16 pKa = 9.77HH17 pKa = 5.81RR18 pKa = 11.84KK19 pKa = 8.51LLKK22 pKa = 8.15KK23 pKa = 9.12TRR25 pKa = 11.84VQRR28 pKa = 11.84RR29 pKa = 11.84RR30 pKa = 11.84LGKK33 pKa = 10.04

Molecular weight: 4.1 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

4237

0

4237

1359760

29

4371

320.9

34.29

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

13.025 ± 0.053

0.735 ± 0.012

6.216 ± 0.03

5.568 ± 0.04

2.955 ± 0.022

9.243 ± 0.037

1.962 ± 0.016

4.045 ± 0.024

2.469 ± 0.027

10.088 ± 0.05

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

1.862 ± 0.018

2.141 ± 0.023

5.483 ± 0.028

2.739 ± 0.017

7.079 ± 0.045

5.509 ± 0.024

6.334 ± 0.053

9.071 ± 0.03

1.437 ± 0.016

2.039 ± 0.017
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski