Ligilactobacillus animalis

Taxonomy: cellular organisms; Bacteria; Terrabacteria group; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Ligilactobacillus

Average proteome isoelectric point is 6.59

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 1844 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A062XBZ3|A0A062XBZ3_9LACO Ribosomal protein L11 methyltransferase OS=Ligilactobacillus animalis OX=1605 GN=prmA PE=3 SV=1
MM1 pKa = 7.73YY2 pKa = 7.96DD3 pKa = 3.07TFLTGIYY10 pKa = 8.52TKK12 pKa = 10.46LRR14 pKa = 11.84SAIEE18 pKa = 4.11DD19 pKa = 3.98KK20 pKa = 11.08YY21 pKa = 11.67DD22 pKa = 3.43CQAWLDD28 pKa = 3.95YY29 pKa = 10.57IEE31 pKa = 5.66KK32 pKa = 10.71YY33 pKa = 10.84GLLEE37 pKa = 3.8QLEE40 pKa = 4.32EE41 pKa = 4.28SVLEE45 pKa = 4.23IEE47 pKa = 5.43FEE49 pKa = 4.1

Molecular weight: 5.92 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A062X7Z2|A0A062X7Z2_9LACO Ectoine/hydroxyectoine ABC transporter permease protein EhuD ehuD OS=Ligilactobacillus animalis OX=1605 GN=Lani381_1657 PE=3 SV=1
MM1 pKa = 7.92PKK3 pKa = 10.14QKK5 pKa = 7.59THH7 pKa = 6.46RR8 pKa = 11.84ASAKK12 pKa = 9.12RR13 pKa = 11.84FKK15 pKa = 10.26RR16 pKa = 11.84TGNGGLKK23 pKa = 9.53RR24 pKa = 11.84AHH26 pKa = 7.01AFTSHH31 pKa = 6.77RR32 pKa = 11.84FHH34 pKa = 7.48GKK36 pKa = 6.37TKK38 pKa = 9.57KK39 pKa = 9.43QRR41 pKa = 11.84RR42 pKa = 11.84QLRR45 pKa = 11.84KK46 pKa = 8.04PAMVSASDD54 pKa = 3.54MKK56 pKa = 10.58RR57 pKa = 11.84IKK59 pKa = 10.73QMLSQMKK66 pKa = 9.93

Molecular weight: 7.72 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

1844

0

1844

542867

29

1959

294.4

32.92

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

8.318 ± 0.061

0.631 ± 0.017

5.663 ± 0.06

6.502 ± 0.063

4.261 ± 0.056

6.55 ± 0.056

1.81 ± 0.023

6.463 ± 0.063

7.322 ± 0.055

10.436 ± 0.093

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.484 ± 0.028

4.362 ± 0.039

3.598 ± 0.037

4.404 ± 0.051

3.893 ± 0.043

5.393 ± 0.056

6.054 ± 0.062

7.119 ± 0.06

0.959 ± 0.023

3.776 ± 0.04
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski