Hallerella succinigenes

Taxonomy: cellular organisms; Bacteria; FCB group; Fibrobacteres; Fibrobacteria; Fibrobacterales; Fibrobacteraceae; Hallerella

Average proteome isoelectric point is 6.45

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 2694 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A2M9A7Q5|A0A2M9A7Q5_9BACT Thioredoxin reductase (NADPH) OS=Hallerella succinigenes OX=1896222 GN=BGX16_1651 PE=4 SV=1
MM1 pKa = 7.26NLKK4 pKa = 10.33LLAGVSAFAFASAFAQDD21 pKa = 4.32DD22 pKa = 5.02YY23 pKa = 11.37YY24 pKa = 11.72AEE26 pKa = 5.32DD27 pKa = 4.08PAQEE31 pKa = 4.02ATPVAEE37 pKa = 4.92APAAEE42 pKa = 4.73PAPSPYY48 pKa = 8.89EE49 pKa = 4.11TEE51 pKa = 4.16PVAQAPAAVAPATVAPAQNSSSLLAQLDD79 pKa = 3.86VLRR82 pKa = 11.84GNAYY86 pKa = 10.31NFVGSEE92 pKa = 3.9LAATTVADD100 pKa = 3.82QLDD103 pKa = 4.55YY104 pKa = 10.79PYY106 pKa = 11.04MMALGQFLYY115 pKa = 10.97VEE117 pKa = 4.38PTNALGYY124 pKa = 9.67VAFNKK129 pKa = 10.53GLTFYY134 pKa = 11.11GGLDD138 pKa = 3.36NSSADD143 pKa = 3.26VGLFTAGIATAGFGLGLDD161 pKa = 3.37IGLSKK166 pKa = 11.08SFVSDD171 pKa = 3.4GDD173 pKa = 3.9DD174 pKa = 3.61DD175 pKa = 4.14ATVVNAGDD183 pKa = 3.82DD184 pKa = 3.87LGVTFAMPLGAYY196 pKa = 9.65ALSLEE201 pKa = 4.64AGWLTIDD208 pKa = 5.72DD209 pKa = 4.44EE210 pKa = 4.99VSTDD214 pKa = 3.75NVEE217 pKa = 3.64NDD219 pKa = 3.09YY220 pKa = 11.29WEE222 pKa = 4.7LSLIARR228 pKa = 11.84FTNSPSATTLGWTAGALLLRR248 pKa = 11.84HH249 pKa = 6.47AEE251 pKa = 4.21TTEE254 pKa = 3.62MTMAGQSSTSASGNSRR270 pKa = 11.84VEE272 pKa = 3.21IDD274 pKa = 3.88PYY276 pKa = 11.31FNLAAQILGNDD287 pKa = 4.0MARR290 pKa = 11.84VMIGSNNTLGIQIYY304 pKa = 10.39DD305 pKa = 3.85GGDD308 pKa = 3.05AGIKK312 pKa = 9.6SHH314 pKa = 6.45TEE316 pKa = 3.26FGLQLEE322 pKa = 4.42PNIWADD328 pKa = 3.36FALNEE333 pKa = 4.02NFLFFGGVSHH343 pKa = 6.96NVLLFGYY350 pKa = 9.84EE351 pKa = 3.98SVKK354 pKa = 10.9YY355 pKa = 10.83VDD357 pKa = 3.91GDD359 pKa = 3.92KK360 pKa = 10.77ISAIQLHH367 pKa = 5.24TEE369 pKa = 3.85RR370 pKa = 11.84TRR372 pKa = 11.84AQLGLRR378 pKa = 11.84AQYY381 pKa = 11.55KK382 pKa = 8.41MVAVEE387 pKa = 4.5ASLTNEE393 pKa = 4.16VYY395 pKa = 10.0TKK397 pKa = 10.22TVAAIFNGDD406 pKa = 4.18NIVADD411 pKa = 4.64LGIFLNFF418 pKa = 3.64

Molecular weight: 44.21 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A2M9AAU5|A0A2M9AAU5_9BACT Motility quorum-sensing regulator/GCU-specific mRNA interferase toxin OS=Hallerella succinigenes OX=1896222 GN=BGX16_2781 PE=4 SV=1
MM1 pKa = 7.51GAPLRR6 pKa = 11.84RR7 pKa = 11.84GLLCFVRR14 pKa = 11.84HH15 pKa = 5.36IKK17 pKa = 9.74MYY19 pKa = 9.55FCIHH23 pKa = 5.16FRR25 pKa = 11.84IRR27 pKa = 11.84IHH29 pKa = 6.42QHH31 pKa = 4.8FQPCFSTLRR40 pKa = 11.84FLLKK44 pKa = 10.14KK45 pKa = 9.36QHH47 pKa = 6.21FPFGTGFAYY56 pKa = 10.36SCMFEE61 pKa = 4.74KK62 pKa = 10.55ISDD65 pKa = 3.83NKK67 pKa = 10.46PLTKK71 pKa = 10.24EE72 pKa = 3.74KK73 pKa = 10.67SLCSHH78 pKa = 6.52YY79 pKa = 10.76NSSSPASPPSTTSSNTSTATNNPPHH104 pKa = 7.09PNQKK108 pKa = 9.58KK109 pKa = 8.3PRR111 pKa = 11.84YY112 pKa = 7.32MRR114 pKa = 11.84NRR116 pKa = 11.84TRR118 pKa = 11.84IPRR121 pKa = 11.84QILLNPQLSYY131 pKa = 11.14LPPEE135 pKa = 4.46TNPGATRR142 pKa = 11.84IGDD145 pKa = 3.87FSLFRR150 pKa = 11.84VKK152 pKa = 10.79LCDD155 pKa = 4.23FSRR158 pKa = 11.84KK159 pKa = 8.78

Molecular weight: 18.42 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

2694

0

2694

925557

29

3890

343.6

38.38

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

8.316 ± 0.046

1.249 ± 0.018

5.724 ± 0.035

6.735 ± 0.049

4.853 ± 0.035

6.815 ± 0.05

1.833 ± 0.019

6.043 ± 0.041

6.771 ± 0.048

9.249 ± 0.055

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.447 ± 0.021

4.417 ± 0.031

3.92 ± 0.027

3.075 ± 0.025

4.731 ± 0.037

6.975 ± 0.053

5.243 ± 0.045

6.748 ± 0.039

1.251 ± 0.017

3.604 ± 0.034
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski