Candidatus Tenderia electrophaga

Taxonomy: cellular organisms; Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Chromatiaceae; Candidatus Tenderia

Average proteome isoelectric point is 6.2

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 3329 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A0S2TEN0|A0A0S2TEN0_9GAMM Response regulatory domain-containing protein OS=Candidatus Tenderia electrophaga OX=1748243 GN=Tel_10975 PE=4 SV=1
MM1 pKa = 7.67KK2 pKa = 9.15NTAAVICFLTTVIPGLSMAQLGYY25 pKa = 11.05GPVEE29 pKa = 4.2GDD31 pKa = 3.51RR32 pKa = 11.84EE33 pKa = 4.12LSVAGTGSSEE43 pKa = 4.11SDD45 pKa = 3.18FDD47 pKa = 3.9NGSFGITGDD56 pKa = 3.42MGWYY60 pKa = 10.15FRR62 pKa = 11.84DD63 pKa = 3.34NMVAGVRR70 pKa = 11.84QSINYY75 pKa = 9.82ASIEE79 pKa = 4.13GASLNDD85 pKa = 3.87DD86 pKa = 4.15FWNGSTRR93 pKa = 11.84GYY95 pKa = 11.01LNYY98 pKa = 10.19QFGSSQWRR106 pKa = 11.84PFVGGSLGMIYY117 pKa = 10.68GDD119 pKa = 3.56GVNNSGFAGVEE130 pKa = 3.98LGLKK134 pKa = 10.18YY135 pKa = 10.63YY136 pKa = 10.81VLAKK140 pKa = 9.9TYY142 pKa = 10.28ILARR146 pKa = 11.84LDD148 pKa = 3.83YY149 pKa = 10.85QWFFDD154 pKa = 5.14DD155 pKa = 6.07SDD157 pKa = 6.26DD158 pKa = 5.27IDD160 pKa = 3.84DD161 pKa = 4.58TFDD164 pKa = 4.1DD165 pKa = 5.0GAWQNTVGIGFNFF178 pKa = 3.6

Molecular weight: 19.44 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A0S2TGJ6|A0A0S2TGJ6_9GAMM T2SSC domain-containing protein OS=Candidatus Tenderia electrophaga OX=1748243 GN=Tel_14740 PE=3 SV=1
MM1 pKa = 7.45KK2 pKa = 9.51RR3 pKa = 11.84TFQPSVLKK11 pKa = 10.42RR12 pKa = 11.84KK13 pKa = 9.04RR14 pKa = 11.84AHH16 pKa = 6.12GFRR19 pKa = 11.84ARR21 pKa = 11.84MATANGRR28 pKa = 11.84KK29 pKa = 8.88ILKK32 pKa = 9.29NRR34 pKa = 11.84RR35 pKa = 11.84AKK37 pKa = 9.8GRR39 pKa = 11.84KK40 pKa = 8.69RR41 pKa = 11.84LAVV44 pKa = 3.41

Molecular weight: 5.16 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

3329

0

3329

1089595

44

2846

327.3

36.16

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

10.564 ± 0.056

0.933 ± 0.015

5.947 ± 0.033

6.187 ± 0.043

3.605 ± 0.027

7.679 ± 0.038

2.435 ± 0.024

5.304 ± 0.033

3.683 ± 0.044

10.827 ± 0.053

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.521 ± 0.021

3.13 ± 0.03

4.576 ± 0.027

4.443 ± 0.03

6.623 ± 0.041

5.408 ± 0.032

4.822 ± 0.029

7.171 ± 0.039

1.347 ± 0.021

2.795 ± 0.027
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski