Lawsonella clevelandensis

Taxonomy: cellular organisms; Bacteria; Terrabacteria group; Actinobacteria; Actinomycetia; Corynebacteriales; Lawsonellaceae; Lawsonella

Average proteome isoelectric point is 6.15

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 1376 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A0M5KZG0|A0A0M5KZG0_9ACTN Glycosyl transferase family 1 OS=Lawsonella clevelandensis OX=1528099 GN=AL705_01750 PE=4 SV=1
MM1 pKa = 7.14ATDD4 pKa = 3.6YY5 pKa = 10.35DD6 pKa = 3.78APRR9 pKa = 11.84NNDD12 pKa = 3.03ADD14 pKa = 4.0GLEE17 pKa = 4.28SSSLEE22 pKa = 3.76EE23 pKa = 3.92LQAGRR28 pKa = 11.84GEE30 pKa = 4.34SQAGSAEE37 pKa = 3.72IDD39 pKa = 3.51EE40 pKa = 4.61VDD42 pKa = 3.29TAEE45 pKa = 4.52SYY47 pKa = 10.11EE48 pKa = 4.27LPGADD53 pKa = 5.14LSDD56 pKa = 3.91EE57 pKa = 4.19EE58 pKa = 4.39LTVRR62 pKa = 11.84VVPKK66 pKa = 10.61QKK68 pKa = 11.02DD69 pKa = 3.33EE70 pKa = 4.36FTCGVCFLVQHH81 pKa = 6.9ISRR84 pKa = 11.84LAYY87 pKa = 9.27IDD89 pKa = 3.96EE90 pKa = 5.53DD91 pKa = 3.8GTMVCQDD98 pKa = 3.52CAGG101 pKa = 3.34

Molecular weight: 10.89 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A0M3TB96|A0A0M3TB96_9ACTN Uncharacterized protein OS=Lawsonella clevelandensis OX=1528099 GN=AL705_00810 PE=4 SV=1
MM1 pKa = 7.69AKK3 pKa = 10.06GKK5 pKa = 8.69RR6 pKa = 11.84TFQPNNRR13 pKa = 11.84RR14 pKa = 11.84RR15 pKa = 11.84ARR17 pKa = 11.84VHH19 pKa = 6.02GFRR22 pKa = 11.84ARR24 pKa = 11.84MRR26 pKa = 11.84TRR28 pKa = 11.84AGRR31 pKa = 11.84TLISRR36 pKa = 11.84RR37 pKa = 11.84RR38 pKa = 11.84AKK40 pKa = 10.52GRR42 pKa = 11.84ASLSAA47 pKa = 3.83

Molecular weight: 5.47 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

1376

0

1376

460035

30

3412

334.3

36.36

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

11.071 ± 0.086

1.0 ± 0.021

6.008 ± 0.056

5.886 ± 0.074

3.084 ± 0.038

8.1 ± 0.051

2.423 ± 0.034

5.019 ± 0.052

3.376 ± 0.057

9.514 ± 0.065

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.327 ± 0.027

2.954 ± 0.04

5.282 ± 0.052

3.527 ± 0.036

6.158 ± 0.061

5.734 ± 0.044

6.42 ± 0.052

8.184 ± 0.055

1.411 ± 0.031

2.523 ± 0.033
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski