Armatimonadetes bacterium DC

Taxonomy: cellular organisms; Bacteria; Terrabacteria group; Armatimonadetes; unclassified Armatimonadetes

Average proteome isoelectric point is 6.62

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 2575 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A0S4PMW0|A0A0S4PMW0_9BACT RNA polymerase sigma-70 factor ECF subfamily OS=Armatimonadetes bacterium DC OX=1661583 GN=DCOP10_12075 PE=3 SV=1
MM1 pKa = 7.5QDD3 pKa = 3.42LGTLGGSQSAAYY15 pKa = 9.75DD16 pKa = 3.39VSADD20 pKa = 3.37GNVIVGQAEE29 pKa = 3.79NDD31 pKa = 4.08GYY33 pKa = 9.51QWRR36 pKa = 11.84PFRR39 pKa = 11.84WTPAGGVEE47 pKa = 5.44DD48 pKa = 5.43LNQTYY53 pKa = 10.95ASLLTGGSEE62 pKa = 3.81LWEE65 pKa = 3.93AHH67 pKa = 6.75AISPDD72 pKa = 2.63GRR74 pKa = 11.84YY75 pKa = 9.15IVGFGYY81 pKa = 10.63NAATDD86 pKa = 3.7RR87 pKa = 11.84DD88 pKa = 4.03EE89 pKa = 6.22AFLLDD94 pKa = 3.36TWRR97 pKa = 11.84TGDD100 pKa = 3.7TNGDD104 pKa = 3.54GCIDD108 pKa = 4.1DD109 pKa = 5.47ADD111 pKa = 4.13LLAVLFAFGTPGSGLTCHH129 pKa = 6.8EE130 pKa = 5.94DD131 pKa = 3.1INKK134 pKa = 10.65DD135 pKa = 3.63GVVDD139 pKa = 4.49DD140 pKa = 5.39ADD142 pKa = 4.07LLTVLFNFGSGCC154 pKa = 3.69

Molecular weight: 16.31 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A0S4PJP5|A0A0S4PJP5_9BACT Uncharacterized protein OS=Armatimonadetes bacterium DC OX=1661583 GN=DCOP10_116282 PE=3 SV=1
MM1 pKa = 7.46KK2 pKa = 9.26RR3 pKa = 11.84TNLLRR8 pKa = 11.84WVRR11 pKa = 11.84RR12 pKa = 11.84TWAQGTVGKK21 pKa = 8.09TVATVLLVAMVMPSFAGVSWRR42 pKa = 11.84TAFRR46 pKa = 11.84GGGKK50 pKa = 9.79

Molecular weight: 5.55 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

2575

0

2575

877366

39

2207

340.7

38.01

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

9.811 ± 0.056

0.945 ± 0.018

4.387 ± 0.033

6.88 ± 0.059

3.583 ± 0.031

7.64 ± 0.061

2.124 ± 0.024

5.007 ± 0.035

2.866 ± 0.039

10.975 ± 0.064

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.172 ± 0.02

2.848 ± 0.033

5.869 ± 0.035

4.485 ± 0.043

7.69 ± 0.038

4.724 ± 0.04

5.292 ± 0.036

7.586 ± 0.043

1.896 ± 0.03

3.222 ± 0.033
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski