Patulibacter medicamentivorans

Taxonomy: cellular organisms; Bacteria; Terrabacteria group; Actinobacteria; Thermoleophilia; Solirubrobacterales; Patulibacteraceae; Patulibacter

Average proteome isoelectric point is 6.6

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 4372 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|H0E9Y1|H0E9Y1_9ACTN Uncharacterized protein OS=Patulibacter medicamentivorans OX=1097667 GN=PAI11_36540 PE=4 SV=1
MM1 pKa = 7.21ATVDD5 pKa = 3.82DD6 pKa = 4.61VEE8 pKa = 4.46AALANVIDD16 pKa = 4.73PEE18 pKa = 5.35LGLDD22 pKa = 3.98FVEE25 pKa = 5.26LGLIYY30 pKa = 10.38GITIEE35 pKa = 4.91DD36 pKa = 3.67GHH38 pKa = 5.44VHH40 pKa = 4.59VTYY43 pKa = 10.36TLTTPGCPIGPQVEE57 pKa = 4.42SQIEE61 pKa = 4.21EE62 pKa = 4.07FVGEE66 pKa = 4.26LEE68 pKa = 4.6GVASVDD74 pKa = 3.58SEE76 pKa = 4.86VTFVPPWSPEE86 pKa = 3.76KK87 pKa = 10.08MSEE90 pKa = 4.02DD91 pKa = 3.19AKK93 pKa = 10.87FALGFF98 pKa = 4.06

Molecular weight: 10.5 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|H0E5U3|H0E5U3_9ACTN Transcriptional regulator MarR family OS=Patulibacter medicamentivorans OX=1097667 GN=PAI11_21920 PE=4 SV=1
MM1 pKa = 7.37PVAARR6 pKa = 11.84SGAAPRR12 pKa = 11.84PPATVAPRR20 pKa = 11.84HH21 pKa = 5.04RR22 pKa = 11.84VRR24 pKa = 11.84RR25 pKa = 11.84SPPSRR30 pKa = 11.84AAGMAGWRR38 pKa = 11.84SWPPMRR44 pKa = 11.84PTRR47 pKa = 11.84ISRR50 pKa = 11.84RR51 pKa = 11.84SS52 pKa = 3.17

Molecular weight: 5.71 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

4372

0

4372

1416978

37

3996

324.1

34.55

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

14.227 ± 0.057

0.719 ± 0.011

6.341 ± 0.03

5.43 ± 0.044

2.614 ± 0.019

9.826 ± 0.04

2.057 ± 0.017

3.754 ± 0.024

1.754 ± 0.029

10.359 ± 0.048

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

1.55 ± 0.014

1.583 ± 0.02

6.087 ± 0.028

2.767 ± 0.021

9.039 ± 0.052

4.758 ± 0.031

5.542 ± 0.035

8.575 ± 0.027

1.329 ± 0.013

1.687 ± 0.018
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski