Nipah virus

Taxonomy: Viruses; Riboviria; Orthornavirae; Negarnaviricota; Haploviricotina; Monjiviricetes; Mononegavirales; Paramyxoviridae; Orthoparamyxovirinae; Henipavirus

Average proteome isoelectric point is 6.0

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 8 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>sp|Q9IK92|NCAP_NIPAV Nucleoprotein OS=Nipah virus OX=121791 GN=N PE=1 SV=1
MM1 pKa = 8.19DD2 pKa = 5.21KK3 pKa = 11.41LEE5 pKa = 4.44LVNDD9 pKa = 4.35GLNIIDD15 pKa = 5.98FIQKK19 pKa = 7.95NQKK22 pKa = 9.6EE23 pKa = 4.2IQKK26 pKa = 9.07TYY28 pKa = 10.35GRR30 pKa = 11.84SSIQQPSIKK39 pKa = 10.19DD40 pKa = 3.28QTKK43 pKa = 8.84AWEE46 pKa = 4.83DD47 pKa = 3.53FLQCTSGEE55 pKa = 4.26SEE57 pKa = 4.09QVEE60 pKa = 4.25GGMSKK65 pKa = 10.96DD66 pKa = 3.5DD67 pKa = 3.67GDD69 pKa = 3.75VEE71 pKa = 4.45RR72 pKa = 11.84RR73 pKa = 11.84NLEE76 pKa = 4.35DD77 pKa = 4.48LSSTSPTDD85 pKa = 3.19GTIGKK90 pKa = 9.18RR91 pKa = 11.84VSNTRR96 pKa = 11.84DD97 pKa = 2.99WAEE100 pKa = 3.94GSDD103 pKa = 5.29DD104 pKa = 3.66IQLDD108 pKa = 3.81PVVTDD113 pKa = 3.48VVYY116 pKa = 10.5HH117 pKa = 5.48DD118 pKa = 5.08HH119 pKa = 7.06GGEE122 pKa = 4.01CTGYY126 pKa = 10.79GFTSSPEE133 pKa = 4.18RR134 pKa = 11.84GWSDD138 pKa = 3.45YY139 pKa = 11.32TSGANNGNVCLVSDD153 pKa = 4.63AKK155 pKa = 9.89MLSYY159 pKa = 10.77APEE162 pKa = 3.89IAVSKK167 pKa = 10.4EE168 pKa = 3.5DD169 pKa = 3.68RR170 pKa = 11.84EE171 pKa = 4.16TDD173 pKa = 4.02LVHH176 pKa = 7.22LEE178 pKa = 4.42NKK180 pKa = 10.43LSTTGLNPTAVPFTLRR196 pKa = 11.84NLSDD200 pKa = 3.72PAKK203 pKa = 9.53DD204 pKa = 3.45SPVIAEE210 pKa = 4.48HH211 pKa = 6.52YY212 pKa = 9.65YY213 pKa = 10.22GLGVKK218 pKa = 8.05EE219 pKa = 4.15QNVGPQTSRR228 pKa = 11.84NVNLDD233 pKa = 3.46SIKK236 pKa = 10.65LYY238 pKa = 10.66TSDD241 pKa = 5.95DD242 pKa = 3.83EE243 pKa = 5.1EE244 pKa = 6.27ADD246 pKa = 3.34QLEE249 pKa = 4.58FEE251 pKa = 5.23DD252 pKa = 4.72EE253 pKa = 4.41FAGSSSEE260 pKa = 4.27VIVGISPEE268 pKa = 4.08DD269 pKa = 3.79EE270 pKa = 4.33EE271 pKa = 4.58PSSVGGKK278 pKa = 9.12PNEE281 pKa = 4.58SIGRR285 pKa = 11.84TIEE288 pKa = 4.16GQSIRR293 pKa = 11.84DD294 pKa = 3.52NLQAKK299 pKa = 9.31DD300 pKa = 3.86NKK302 pKa = 9.73STDD305 pKa = 3.41VPGAGPKK312 pKa = 10.25DD313 pKa = 3.52SAVKK317 pKa = 10.37EE318 pKa = 4.11EE319 pKa = 4.44PPQKK323 pKa = 9.86RR324 pKa = 11.84LPMLAEE330 pKa = 4.08EE331 pKa = 5.05FEE333 pKa = 4.85CSGSEE338 pKa = 3.96DD339 pKa = 4.05PIIRR343 pKa = 11.84EE344 pKa = 3.95LLKK347 pKa = 10.89EE348 pKa = 3.86NSLINCQQGKK358 pKa = 9.45DD359 pKa = 3.68AQPPYY364 pKa = 8.9HH365 pKa = 6.68WSIEE369 pKa = 4.04RR370 pKa = 11.84SISPDD375 pKa = 2.53KK376 pKa = 11.25TEE378 pKa = 3.96IVNGAVQTADD388 pKa = 3.47RR389 pKa = 11.84QRR391 pKa = 11.84PGTPMPKK398 pKa = 9.87SRR400 pKa = 11.84GIPIKK405 pKa = 10.52KK406 pKa = 8.66GTDD409 pKa = 2.9AKK411 pKa = 10.69YY412 pKa = 10.28PSAGTEE418 pKa = 3.81NVPGSKK424 pKa = 9.92SGATRR429 pKa = 11.84HH430 pKa = 5.28VRR432 pKa = 11.84GSPPYY437 pKa = 10.27QEE439 pKa = 4.47GKK441 pKa = 10.06SVNAEE446 pKa = 3.78NVQLNASTAVKK457 pKa = 8.92EE458 pKa = 4.36TDD460 pKa = 3.12KK461 pKa = 11.81SEE463 pKa = 4.05VNPVDD468 pKa = 5.69DD469 pKa = 5.81NDD471 pKa = 4.34SLDD474 pKa = 4.4DD475 pKa = 4.26KK476 pKa = 11.55YY477 pKa = 11.65IMPSDD482 pKa = 4.05DD483 pKa = 3.52FSNTFFPHH491 pKa = 5.87DD492 pKa = 3.84TDD494 pKa = 3.38RR495 pKa = 11.84LNYY498 pKa = 9.73HH499 pKa = 7.03ADD501 pKa = 3.2HH502 pKa = 6.79LGDD505 pKa = 3.89YY506 pKa = 10.71DD507 pKa = 6.17LEE509 pKa = 4.55TLCEE513 pKa = 4.02EE514 pKa = 4.32SVLMGVINSIKK525 pKa = 10.39LINLDD530 pKa = 3.0MRR532 pKa = 11.84LNHH535 pKa = 6.87IEE537 pKa = 4.16EE538 pKa = 4.25QVKK541 pKa = 9.97EE542 pKa = 3.88IPKK545 pKa = 9.97IINKK549 pKa = 9.78LEE551 pKa = 4.5SIDD554 pKa = 4.02RR555 pKa = 11.84VLAKK559 pKa = 10.14TNTALSTIEE568 pKa = 3.82GHH570 pKa = 6.27LVSMMIMIPGKK581 pKa = 10.71GKK583 pKa = 10.48GEE585 pKa = 3.69RR586 pKa = 11.84KK587 pKa = 9.75GKK589 pKa = 10.07NNPEE593 pKa = 4.17LKK595 pKa = 10.22PVIGRR600 pKa = 11.84DD601 pKa = 3.04ILEE604 pKa = 4.16QQSLFSFDD612 pKa = 3.07NVKK615 pKa = 10.48NFRR618 pKa = 11.84DD619 pKa = 3.83GSLTNEE625 pKa = 4.21PYY627 pKa = 10.58GAAVQLRR634 pKa = 11.84EE635 pKa = 4.25DD636 pKa = 4.91LILPEE641 pKa = 4.92LNFEE645 pKa = 4.33EE646 pKa = 4.79TNASQFVPMADD657 pKa = 3.3DD658 pKa = 3.53SSRR661 pKa = 11.84DD662 pKa = 3.63VIKK665 pKa = 9.91TLIRR669 pKa = 11.84THH671 pKa = 5.98IKK673 pKa = 10.44DD674 pKa = 3.3RR675 pKa = 11.84EE676 pKa = 4.2LRR678 pKa = 11.84SEE680 pKa = 4.69LIGYY684 pKa = 7.78LNKK687 pKa = 10.56AEE689 pKa = 4.19NDD691 pKa = 3.48EE692 pKa = 4.69EE693 pKa = 4.13IQEE696 pKa = 4.22IANTVNDD703 pKa = 4.81IIDD706 pKa = 3.68GNII709 pKa = 2.98

Molecular weight: 78.3 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>sp|Q9IK91|PHOSP_NIPAV Phosphoprotein OS=Nipah virus OX=121791 GN=P/V/C PE=1 SV=1
MM1 pKa = 7.51EE2 pKa = 6.3PDD4 pKa = 3.13IKK6 pKa = 10.9SISSEE11 pKa = 3.97SMEE14 pKa = 4.14GVSDD18 pKa = 4.46FSPSSWEE25 pKa = 3.6HH26 pKa = 5.58GGYY29 pKa = 9.7LDD31 pKa = 4.68KK32 pKa = 11.44VEE34 pKa = 4.88PEE36 pKa = 3.47IDD38 pKa = 3.8EE39 pKa = 4.53NGSMIPKK46 pKa = 9.67YY47 pKa = 10.46KK48 pKa = 10.14IYY50 pKa = 10.47TPGANEE56 pKa = 3.76RR57 pKa = 11.84KK58 pKa = 9.16YY59 pKa = 11.08NNYY62 pKa = 9.42MYY64 pKa = 9.67LICYY68 pKa = 8.93GFVEE72 pKa = 4.58DD73 pKa = 5.22VEE75 pKa = 4.54RR76 pKa = 11.84TPEE79 pKa = 3.53TGKK82 pKa = 10.18RR83 pKa = 11.84KK84 pKa = 9.95KK85 pKa = 9.99IRR87 pKa = 11.84TIAAYY92 pKa = 8.88PLGVGKK98 pKa = 10.17SASHH102 pKa = 6.01PQDD105 pKa = 3.81LLEE108 pKa = 4.51EE109 pKa = 4.4LCSLKK114 pKa = 9.7VTVRR118 pKa = 11.84RR119 pKa = 11.84TAGSTEE125 pKa = 3.97KK126 pKa = 10.43IVFGSSGPLNHH137 pKa = 6.8LVPWKK142 pKa = 10.41KK143 pKa = 10.57VLTSGSIFNAVKK155 pKa = 9.82VCRR158 pKa = 11.84NVDD161 pKa = 3.48QIQLDD166 pKa = 3.4KK167 pKa = 11.11HH168 pKa = 4.46QALRR172 pKa = 11.84IFFLSITKK180 pKa = 10.61LNDD183 pKa = 2.92SGIYY187 pKa = 8.39MIPRR191 pKa = 11.84TMLEE195 pKa = 3.67FRR197 pKa = 11.84RR198 pKa = 11.84NNAIAFNLLVYY209 pKa = 10.11LKK211 pKa = 10.14IDD213 pKa = 3.74ADD215 pKa = 3.98LSKK218 pKa = 10.54MGIQGSLDD226 pKa = 3.2KK227 pKa = 11.43DD228 pKa = 3.83GFKK231 pKa = 10.66VASFMLHH238 pKa = 6.3LGNFVRR244 pKa = 11.84RR245 pKa = 11.84AGKK248 pKa = 10.17YY249 pKa = 9.66YY250 pKa = 10.69SVDD253 pKa = 3.09YY254 pKa = 10.53CRR256 pKa = 11.84RR257 pKa = 11.84KK258 pKa = 8.96IDD260 pKa = 3.4RR261 pKa = 11.84MKK263 pKa = 10.9LQFSLGSIGGLSLHH277 pKa = 6.47IKK279 pKa = 9.92INGVISKK286 pKa = 10.48RR287 pKa = 11.84LFAQMGFQKK296 pKa = 10.44NLCFSLMDD304 pKa = 3.9INPWLNRR311 pKa = 11.84LTWNNSCEE319 pKa = 4.12ISRR322 pKa = 11.84VAAVLQPSIPRR333 pKa = 11.84EE334 pKa = 3.57FMIYY338 pKa = 10.7DD339 pKa = 3.94DD340 pKa = 4.73VFIDD344 pKa = 3.35NTGRR348 pKa = 11.84ILKK351 pKa = 9.94GG352 pKa = 3.12

Molecular weight: 39.93 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

8

0

8

5891

352

2244

736.4

82.6

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

5.025 ± 0.637

1.731 ± 0.274

6.281 ± 0.535

6.569 ± 0.644

3.191 ± 0.369

6.043 ± 0.699

1.765 ± 0.381

8.046 ± 0.559

6.315 ± 0.268

8.98 ± 0.77

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.326 ± 0.217

5.805 ± 0.316

4.651 ± 0.474

3.768 ± 0.263

5.008 ± 0.324

8.861 ± 0.221

5.483 ± 0.253

5.839 ± 0.277

0.985 ± 0.131

3.327 ± 0.362
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski