Rhodotorula taiwanensis

Taxonomy: cellular organisms; Eukaryota; Opisthokonta; Fungi; Dikarya; Basidiomycota; Pucciniomycotina; Microbotryomycetes; Sporidiobolales; Sporidiobolaceae; Rhodotorula

Average proteome isoelectric point is 6.63

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 7012 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A2S5B4A1|A0A2S5B4A1_9BASI Uncharacterized protein OS=Rhodotorula taiwanensis OX=741276 GN=BMF94_5462 PE=4 SV=1
MM1 pKa = 7.4SVINLTDD8 pKa = 3.04VTVQNNPAGFTDD20 pKa = 5.21PYY22 pKa = 10.37QFQITFEE29 pKa = 4.44CVSPIQDD36 pKa = 3.53DD37 pKa = 4.78LEE39 pKa = 4.28WKK41 pKa = 8.51LTYY44 pKa = 10.43VGSAEE49 pKa = 4.01SDD51 pKa = 3.61SYY53 pKa = 11.69DD54 pKa = 4.17QEE56 pKa = 6.29LDD58 pKa = 3.15TCMVGPVPVGINSFPFEE75 pKa = 4.0AAAPLPSRR83 pKa = 11.84IPSSDD88 pKa = 3.79LIGVTVILLTCSYY101 pKa = 10.93NDD103 pKa = 3.35QEE105 pKa = 4.63FVRR108 pKa = 11.84IGYY111 pKa = 8.07YY112 pKa = 10.85VNTEE116 pKa = 3.93YY117 pKa = 11.4GDD119 pKa = 4.23PEE121 pKa = 5.04LKK123 pKa = 10.51AQYY126 pKa = 9.73DD127 pKa = 3.34ASLAEE132 pKa = 4.35DD133 pKa = 4.03AEE135 pKa = 4.59EE136 pKa = 4.56KK137 pKa = 10.64GIKK140 pKa = 10.38APDD143 pKa = 3.61PTQHH147 pKa = 6.42IDD149 pKa = 3.14KK150 pKa = 10.55LVRR153 pKa = 11.84NVLADD158 pKa = 3.5KK159 pKa = 10.88PRR161 pKa = 11.84VTKK164 pKa = 10.16FNIQWDD170 pKa = 4.45TPVAAVPTMSSAPIGGVTSEE190 pKa = 4.54ALAGAPAAAAPPPPFNPYY208 pKa = 9.6SAAAA212 pKa = 3.79

Molecular weight: 22.77 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A2S5BBQ0|A0A2S5BBQ0_9BASI Uncharacterized protein OS=Rhodotorula taiwanensis OX=741276 GN=BMF94_2752 PE=4 SV=1
MM1 pKa = 8.1DD2 pKa = 5.07KK3 pKa = 11.24GKK5 pKa = 11.15GKK7 pKa = 8.98ATEE10 pKa = 4.19LQPISLGVTLVADD23 pKa = 4.54GCPASEE29 pKa = 4.8GDD31 pKa = 5.1DD32 pKa = 3.75LAPSQLSHH40 pKa = 5.8VQAPATPPRR49 pKa = 11.84ASPLSVTSRR58 pKa = 11.84SSSFFDD64 pKa = 4.35DD65 pKa = 3.89EE66 pKa = 4.71PVPSTSSTPPQLSRR80 pKa = 11.84PAFVEE85 pKa = 4.18LVEE88 pKa = 4.43TCPTPPSAATTEE100 pKa = 3.98SSRR103 pKa = 11.84YY104 pKa = 8.65RR105 pKa = 11.84RR106 pKa = 11.84RR107 pKa = 11.84PLLQANPSLVSLALVNEE124 pKa = 4.49IGDD127 pKa = 4.58DD128 pKa = 3.76DD129 pKa = 4.07TPAAVNALDD138 pKa = 4.13EE139 pKa = 4.87RR140 pKa = 11.84PHH142 pKa = 6.21EE143 pKa = 5.33LPSAWQNDD151 pKa = 3.4THH153 pKa = 6.19SRR155 pKa = 11.84RR156 pKa = 11.84RR157 pKa = 11.84SRR159 pKa = 11.84QSRR162 pKa = 11.84RR163 pKa = 11.84STDD166 pKa = 3.14SARR169 pKa = 11.84TAAPLSEE176 pKa = 4.41LATAEE181 pKa = 4.11LVASILLQGPQVAAASTADD200 pKa = 3.63AQPHH204 pKa = 5.66LRR206 pKa = 11.84RR207 pKa = 11.84PSLDD211 pKa = 3.12TRR213 pKa = 11.84HH214 pKa = 6.42SSRR217 pKa = 11.84LSNDD221 pKa = 3.01PYY223 pKa = 11.04GVSSRR228 pKa = 11.84YY229 pKa = 9.18EE230 pKa = 4.02GSRR233 pKa = 11.84KK234 pKa = 9.85SPSLDD239 pKa = 3.05LRR241 pKa = 11.84QQSFSSSHH249 pKa = 5.24SLRR252 pKa = 11.84PLSTPQHH259 pKa = 6.28RR260 pKa = 11.84PSAPALLRR268 pKa = 11.84TRR270 pKa = 11.84PSTVTLVSWDD280 pKa = 4.15LSHH283 pKa = 7.26LPAPNTPRR291 pKa = 11.84EE292 pKa = 4.13RR293 pKa = 11.84PFKK296 pKa = 10.73VPFRR300 pKa = 11.84SVFLPTSYY308 pKa = 11.04LGGGKK313 pKa = 8.24GTGLYY318 pKa = 10.47GDD320 pKa = 3.55PCGPIEE326 pKa = 4.18RR327 pKa = 11.84KK328 pKa = 9.58VKK330 pKa = 10.42RR331 pKa = 11.84EE332 pKa = 3.42RR333 pKa = 11.84ARR335 pKa = 11.84PSNASGGSVGLGEE348 pKa = 4.26RR349 pKa = 11.84WRR351 pKa = 11.84RR352 pKa = 11.84WSGRR356 pKa = 11.84RR357 pKa = 11.84SSAMGYY363 pKa = 10.18GGRR366 pKa = 11.84TSWDD370 pKa = 3.6EE371 pKa = 3.97ASSIPPSATEE381 pKa = 4.32DD382 pKa = 3.46VGSLARR388 pKa = 11.84EE389 pKa = 4.23TEE391 pKa = 4.25RR392 pKa = 11.84PPSRR396 pKa = 11.84SSSLLRR402 pKa = 11.84RR403 pKa = 11.84FKK405 pKa = 10.64RR406 pKa = 11.84RR407 pKa = 11.84SWLSMPSSCEE417 pKa = 3.62VNGAPEE423 pKa = 4.01RR424 pKa = 11.84PNARR428 pKa = 11.84RR429 pKa = 11.84QSLTSALFGSRR440 pKa = 11.84RR441 pKa = 11.84SKK443 pKa = 10.71AASKK447 pKa = 10.6ASSEE451 pKa = 4.1GLEE454 pKa = 4.06TWVSVVVRR462 pKa = 4.49

Molecular weight: 49.89 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

7012

0

7012

3853630

11

5360

549.6

59.62

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

11.484 ± 0.03

0.981 ± 0.009

5.79 ± 0.02

5.992 ± 0.023

3.232 ± 0.018

7.217 ± 0.025

2.222 ± 0.013

3.612 ± 0.019

4.029 ± 0.021

9.14 ± 0.03

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

1.695 ± 0.009

2.578 ± 0.012

6.932 ± 0.034

3.768 ± 0.02

6.985 ± 0.023

8.834 ± 0.036

5.826 ± 0.016

6.154 ± 0.019

1.243 ± 0.01

2.287 ± 0.014
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski