Serendipita indica (strain DSM 11827) (Root endophyte fungus) (Piriformospora indica)

Taxonomy: cellular organisms; Eukaryota; Opisthokonta; Fungi; Dikarya; Basidiomycota; Agaricomycotina; Agaricomycetes; Agaricomycetes incertae sedis; Sebacinales; Serendipitaceae; Serendipita; Serendipita indica

Average proteome isoelectric point is 6.78

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 11780 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|G4U0X3|G4U0X3_SERID Uncharacterized protein OS=Serendipita indica (strain DSM 11827) OX=1109443 GN=PIIN_11198 PE=4 SV=1
MM1 pKa = 7.42AHH3 pKa = 6.67FANPVVVDD11 pKa = 4.86DD12 pKa = 4.13KK13 pKa = 11.42TFAYY17 pKa = 10.18DD18 pKa = 3.37EE19 pKa = 4.32RR20 pKa = 11.84DD21 pKa = 3.4AYY23 pKa = 11.11AMGNFHH29 pKa = 7.47AGLATEE35 pKa = 4.48ATMDD39 pKa = 4.15DD40 pKa = 4.12YY41 pKa = 11.85ADD43 pKa = 4.52EE44 pKa = 4.44EE45 pKa = 4.37DD46 pKa = 4.28SPYY49 pKa = 11.32EE50 pKa = 3.91EE51 pKa = 4.68

Molecular weight: 5.74 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|G4T6L9|G4T6L9_SERID F-box domain-containing protein OS=Serendipita indica (strain DSM 11827) OX=1109443 GN=PIIN_00799 PE=4 SV=1
MM1 pKa = 7.26TLASALGLRR10 pKa = 11.84RR11 pKa = 11.84SPRR14 pKa = 11.84NHH16 pKa = 7.0RR17 pKa = 11.84SHH19 pKa = 6.97AANRR23 pKa = 11.84NAGLKK28 pKa = 10.19SALTNPNSTHH38 pKa = 7.15AGRR41 pKa = 11.84AQAKK45 pKa = 10.01HH46 pKa = 5.32EE47 pKa = 3.91LHH49 pKa = 6.3MRR51 pKa = 11.84GQSAHH56 pKa = 5.8VPLMAKK62 pKa = 9.8VKK64 pKa = 10.07RR65 pKa = 11.84ALGMHH70 pKa = 4.93QTPRR74 pKa = 11.84HH75 pKa = 4.29QRR77 pKa = 11.84KK78 pKa = 9.38VNNARR83 pKa = 11.84ARR85 pKa = 11.84ARR87 pKa = 11.84RR88 pKa = 11.84QAGTTRR94 pKa = 11.84KK95 pKa = 5.41THH97 pKa = 6.04RR98 pKa = 11.84RR99 pKa = 11.84RR100 pKa = 11.84HH101 pKa = 4.66YY102 pKa = 10.7

Molecular weight: 11.53 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

11780

0

11780

5140652

10

4811

436.4

48.25

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

8.389 ± 0.019

1.139 ± 0.009

5.357 ± 0.015

5.945 ± 0.02

3.492 ± 0.014

6.392 ± 0.024

2.547 ± 0.01

5.043 ± 0.018

4.515 ± 0.017

9.252 ± 0.028

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.112 ± 0.008

3.533 ± 0.01

6.445 ± 0.03

3.925 ± 0.014

6.36 ± 0.019

8.937 ± 0.034

6.332 ± 0.016

6.135 ± 0.016

1.44 ± 0.008

2.649 ± 0.01
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski