Chitinivibrio alkaliphilus ACht1

Taxonomy: cellular organisms; Bacteria; FCB group; Fibrobacteres; Chitinivibrionia; Chitinivibrionales; Chitinivibrionaceae; Chitinivibrio; Chitinivibrio alkaliphilus

Average proteome isoelectric point is 6.19

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 2304 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|U7DDA3|U7DDA3_9BACT Pyruvate:feredoxin oxidoreductase OS=Chitinivibrio alkaliphilus ACht1 OX=1313304 GN=CALK_0639 PE=3 SV=1
MM1 pKa = 7.48KK2 pKa = 10.41FLVFCITFFSFVLLAGCARR21 pKa = 11.84EE22 pKa = 4.02HH23 pKa = 7.13DD24 pKa = 4.81VIGDD28 pKa = 3.44PHH30 pKa = 7.54MDD32 pKa = 3.25EE33 pKa = 4.55PAATEE38 pKa = 4.87PYY40 pKa = 10.0TGDD43 pKa = 3.32TGEE46 pKa = 5.08EE47 pKa = 4.35EE48 pKa = 4.52PPMDD52 pKa = 5.22DD53 pKa = 3.29PHH55 pKa = 7.71GDD57 pKa = 3.18PHH59 pKa = 7.4MDD61 pKa = 4.12DD62 pKa = 3.69PHH64 pKa = 7.73GDD66 pKa = 3.22PHH68 pKa = 7.4MDD70 pKa = 4.12DD71 pKa = 3.69PHH73 pKa = 7.73GDD75 pKa = 3.22PHH77 pKa = 7.4MDD79 pKa = 4.12DD80 pKa = 3.69PHH82 pKa = 7.73GDD84 pKa = 3.22PHH86 pKa = 7.4MDD88 pKa = 4.12DD89 pKa = 3.69PHH91 pKa = 7.73GDD93 pKa = 3.22PHH95 pKa = 7.4MDD97 pKa = 4.12DD98 pKa = 3.69PHH100 pKa = 7.73GDD102 pKa = 3.22PHH104 pKa = 7.4MDD106 pKa = 4.12DD107 pKa = 3.69PHH109 pKa = 7.71GDD111 pKa = 3.22PHH113 pKa = 7.43MDD115 pKa = 3.55EE116 pKa = 4.46PHH118 pKa = 7.21GDD120 pKa = 3.16PHH122 pKa = 7.75MDD124 pKa = 4.02DD125 pKa = 3.39QHH127 pKa = 6.71MDD129 pKa = 3.22APQLDD134 pKa = 4.54DD135 pKa = 3.38QHH137 pKa = 7.31MDD139 pKa = 3.66DD140 pKa = 4.36PHH142 pKa = 8.48DD143 pKa = 4.8GGDD146 pKa = 3.48EE147 pKa = 4.05LQIQQ151 pKa = 3.78

Molecular weight: 16.89 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|U7D9U2|U7D9U2_9BACT Cell division protein FtsQ OS=Chitinivibrio alkaliphilus ACht1 OX=1313304 GN=CALK_1908 PE=4 SV=1
MM1 pKa = 7.45KK2 pKa = 9.61RR3 pKa = 11.84TFQPSNRR10 pKa = 11.84KK11 pKa = 9.29KK12 pKa = 9.89INKK15 pKa = 9.12HH16 pKa = 4.13GFRR19 pKa = 11.84SRR21 pKa = 11.84MATKK25 pKa = 10.49NGRR28 pKa = 11.84KK29 pKa = 7.92VLKK32 pKa = 10.05RR33 pKa = 11.84RR34 pKa = 11.84RR35 pKa = 11.84AKK37 pKa = 9.61GRR39 pKa = 11.84KK40 pKa = 8.54RR41 pKa = 11.84LSVSS45 pKa = 2.92

Molecular weight: 5.4 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

2304

0

2304

774486

20

2622

336.1

37.69

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

7.479 ± 0.051

1.113 ± 0.021

5.647 ± 0.051

7.259 ± 0.057

4.49 ± 0.037

6.96 ± 0.051

2.616 ± 0.026

6.677 ± 0.047

4.514 ± 0.057

9.614 ± 0.053

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.355 ± 0.019

3.424 ± 0.03

4.157 ± 0.028

3.516 ± 0.025

5.978 ± 0.046

6.98 ± 0.043

6.052 ± 0.039

6.543 ± 0.046

1.002 ± 0.02

3.626 ± 0.033
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski