Phomopsis vexans RNA virus

Taxonomy: Viruses; Riboviria; Orthornavirae; Duplornaviricota; Chrymotiviricetes; Ghabrivirales; Totiviridae; Victorivirus; unclassified Victorivirus

Average proteome isoelectric point is 6.53

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 2 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    

Protein with the lowest isoelectric point:
>tr|A0A0A7RU00|A0A0A7RU00_9VIRU Coat protein OS=Phomopsis vexans RNA virus OX=1580605 GN=CP PE=4 SV=1
MM1 pKa = 7.73ASTANFQAAVSSMLSGTLAGVPGGLLQQEE30 pKa = 4.14DD31 pKa = 4.5RR32 pKa = 11.84YY33 pKa = 10.63RR34 pKa = 11.84RR35 pKa = 11.84YY36 pKa = 10.25RR37 pKa = 11.84SGLSIGVQEE46 pKa = 4.96HH47 pKa = 6.55GSLTYY52 pKa = 10.04SRR54 pKa = 11.84RR55 pKa = 11.84SIFYY59 pKa = 8.6EE60 pKa = 3.74VGRR63 pKa = 11.84RR64 pKa = 11.84TPRR67 pKa = 11.84LNDD70 pKa = 3.19ALAFTKK76 pKa = 10.44NDD78 pKa = 3.42EE79 pKa = 4.66EE80 pKa = 4.27ITMVDD85 pKa = 2.89ASVPINPAQAANFEE99 pKa = 4.05GWARR103 pKa = 11.84KK104 pKa = 9.44YY105 pKa = 11.34SNFSPQWEE113 pKa = 4.33MMDD116 pKa = 3.25LAGIVEE122 pKa = 4.63RR123 pKa = 11.84LAKK126 pKa = 10.16AVAAQSVYY134 pKa = 11.26GGVTCANLRR143 pKa = 11.84AGQPVRR149 pKa = 11.84VVALGTLDD157 pKa = 3.77SPQTASVNSVFIPRR171 pKa = 11.84TVEE174 pKa = 3.8TTTSDD179 pKa = 3.11GVFAVLSAAANGEE192 pKa = 4.36GASVTTDD199 pKa = 3.22VLRR202 pKa = 11.84LDD204 pKa = 4.51AGTNQPIVPTVDD216 pKa = 2.95NAVLATSCVEE226 pKa = 3.78ALRR229 pKa = 11.84ILGANLEE236 pKa = 4.19EE237 pKa = 4.99SGAGDD242 pKa = 3.6VFALAVTRR250 pKa = 11.84GVHH253 pKa = 5.6SVLSVVGHH261 pKa = 5.49TDD263 pKa = 2.69EE264 pKa = 5.28GGWIRR269 pKa = 11.84GVFRR273 pKa = 11.84HH274 pKa = 5.41CTFRR278 pKa = 11.84VPYY281 pKa = 10.51GGINPSLRR289 pKa = 11.84EE290 pKa = 4.08YY291 pKa = 10.56PGLPPLASTLTGHH304 pKa = 6.94ISAWCDD310 pKa = 3.48AIALKK315 pKa = 10.6SAAAVAHH322 pKa = 6.82CDD324 pKa = 3.38PCVTASGGTYY334 pKa = 7.97PTVFTSNRR342 pKa = 11.84GLVSPPGTDD351 pKa = 3.18EE352 pKa = 5.66ADD354 pKa = 4.17LGDD357 pKa = 4.47ADD359 pKa = 4.1ADD361 pKa = 3.71AVGRR365 pKa = 11.84QVGADD370 pKa = 3.71LGRR373 pKa = 11.84FSPVYY378 pKa = 9.63MDD380 pKa = 4.42ALTTIFGLRR389 pKa = 11.84AVSGVADD396 pKa = 3.5AVFRR400 pKa = 11.84TVGRR404 pKa = 11.84DD405 pKa = 3.73YY406 pKa = 11.7LNGAHH411 pKa = 7.13DD412 pKa = 3.22RR413 pKa = 11.84HH414 pKa = 6.18LRR416 pKa = 11.84HH417 pKa = 5.88KK418 pKa = 9.26TVAPYY423 pKa = 9.8FWIEE427 pKa = 3.9PTSLIPAGAFGTVAEE442 pKa = 4.28QAGFGALTTPGVEE455 pKa = 3.99RR456 pKa = 11.84EE457 pKa = 3.91QPAFEE462 pKa = 4.32KK463 pKa = 10.83VRR465 pKa = 11.84EE466 pKa = 4.05LDD468 pKa = 2.87HH469 pKa = 6.92GRR471 pKa = 11.84NANYY475 pKa = 8.85ATIAFKK481 pKa = 10.22MRR483 pKa = 11.84SARR486 pKa = 11.84TSGLICAYY494 pKa = 10.1AGTPASLTGLRR505 pKa = 11.84LYY507 pKa = 10.74QFDD510 pKa = 4.06EE511 pKa = 4.6EE512 pKa = 5.04SVVLAGDD519 pKa = 3.35QGPTGGRR526 pKa = 11.84VAQKK530 pKa = 10.12HH531 pKa = 5.12AAADD535 pKa = 4.59PISSYY540 pKa = 9.56LWRR543 pKa = 11.84RR544 pKa = 11.84GQSPIPAPAEE554 pKa = 3.84FVNTQGSYY562 pKa = 8.35AAKK565 pKa = 9.93YY566 pKa = 10.21KK567 pKa = 10.16IVEE570 pKa = 3.9WDD572 pKa = 3.31EE573 pKa = 5.79DD574 pKa = 3.81FDD576 pKa = 4.1ATLGDD581 pKa = 3.66LPEE584 pKa = 4.77AFEE587 pKa = 4.52LEE589 pKa = 4.48QYY591 pKa = 8.96SVRR594 pKa = 11.84WRR596 pKa = 11.84VTVPTGLPNGPSNAGDD612 pKa = 3.52SGAKK616 pKa = 9.33RR617 pKa = 11.84ARR619 pKa = 11.84SRR621 pKa = 11.84AAISLAQATIRR632 pKa = 11.84NRR634 pKa = 11.84GLGDD638 pKa = 3.55ANSPVISVSNVPPSWEE654 pKa = 4.3DD655 pKa = 3.41EE656 pKa = 4.35PGRR659 pKa = 11.84PMAADD664 pKa = 3.19IGDD667 pKa = 3.88HH668 pKa = 5.9RR669 pKa = 11.84VGVADD674 pKa = 3.93GQVYY678 pKa = 10.51ASGADD683 pKa = 3.13RR684 pKa = 11.84HH685 pKa = 5.95VRR687 pKa = 11.84GDD689 pKa = 3.6DD690 pKa = 3.1RR691 pKa = 11.84GAALNPVAHH700 pKa = 6.23HH701 pKa = 5.73QPLRR705 pKa = 11.84GAPYY709 pKa = 8.44PPRR712 pKa = 11.84GGGVLPGGGGPALPPQPPAGPPPAAPPSGGDD743 pKa = 3.09NGSDD747 pKa = 3.23VSGPANEE754 pKa = 4.36PDD756 pKa = 3.81AGNAAPAPPLL766 pKa = 3.63

Molecular weight:
80.01 kDa
Isoelectric point according different methods:






Protein with the highest isoelectric point:
>tr|A0A0A7RU00|A0A0A7RU00_9VIRU Coat protein OS=Phomopsis vexans RNA virus OX=1580605 GN=CP PE=4 SV=1
MM1 pKa = 7.9PFAQQISFVYY11 pKa = 9.89RR12 pKa = 11.84PRR14 pKa = 11.84WNNTVPSRR22 pKa = 11.84LARR25 pKa = 11.84SAASFLHH32 pKa = 6.48CFVPVQVPLEE42 pKa = 4.04QGDD45 pKa = 4.51LDD47 pKa = 4.75LLTGQLCGHH56 pKa = 7.15LTMPPDD62 pKa = 3.81AGFSSMVVDD71 pKa = 4.43RR72 pKa = 11.84DD73 pKa = 3.05EE74 pKa = 5.7AMAAFPPKK82 pKa = 9.65NYY84 pKa = 10.81AMAIEE89 pKa = 4.28KK90 pKa = 10.84ANIYY94 pKa = 9.83VDD96 pKa = 4.42EE97 pKa = 4.88IARR100 pKa = 11.84DD101 pKa = 4.03MYY103 pKa = 11.27KK104 pKa = 8.68HH105 pKa = 6.08TPTEE109 pKa = 3.92LLRR112 pKa = 11.84AGPYY116 pKa = 9.96LRR118 pKa = 11.84RR119 pKa = 11.84LRR121 pKa = 11.84DD122 pKa = 3.09KK123 pKa = 11.27GVTHH127 pKa = 6.97DD128 pKa = 3.58QAAGFLLYY136 pKa = 10.61AATLSRR142 pKa = 11.84WCPHH146 pKa = 5.83AYY148 pKa = 9.16EE149 pKa = 3.82WAYY152 pKa = 10.93YY153 pKa = 10.64AITDD157 pKa = 3.83PAAAKK162 pKa = 9.8EE163 pKa = 4.07VSDD166 pKa = 3.73YY167 pKa = 11.48LKK169 pKa = 11.0AVGANSSSYY178 pKa = 10.89GALLVEE184 pKa = 4.5TDD186 pKa = 3.46TLQGRR191 pKa = 11.84GVPGTDD197 pKa = 4.26LPSDD201 pKa = 3.53SAKK204 pKa = 10.36RR205 pKa = 11.84CNLAALKK212 pKa = 10.52EE213 pKa = 4.14DD214 pKa = 3.96MLAEE218 pKa = 4.77LDD220 pKa = 4.01PVALRR225 pKa = 11.84SAVRR229 pKa = 11.84RR230 pKa = 11.84VLRR233 pKa = 11.84HH234 pKa = 5.34EE235 pKa = 3.98LRR237 pKa = 11.84HH238 pKa = 6.29RR239 pKa = 11.84DD240 pKa = 3.13GNYY243 pKa = 10.82ALDD246 pKa = 4.09FPTLEE251 pKa = 4.42EE252 pKa = 4.17HH253 pKa = 6.85WSSRR257 pKa = 11.84WSWAVNGSHH266 pKa = 6.71SSMVSKK272 pKa = 8.94TVPMVGVRR280 pKa = 11.84GKK282 pKa = 9.75HH283 pKa = 3.3VHH285 pKa = 6.09KK286 pKa = 9.74YY287 pKa = 9.53HH288 pKa = 6.37RR289 pKa = 11.84RR290 pKa = 11.84AWLEE294 pKa = 3.78SVRR297 pKa = 11.84DD298 pKa = 3.79DD299 pKa = 5.13PRR301 pKa = 11.84PNWEE305 pKa = 3.5GKK307 pKa = 8.14TFVSCNPKK315 pKa = 10.27LEE317 pKa = 4.43CGKK320 pKa = 8.26TRR322 pKa = 11.84AIYY325 pKa = 10.51ACDD328 pKa = 3.34TVSYY332 pKa = 10.56LAFEE336 pKa = 4.62HH337 pKa = 6.75LMAPVEE343 pKa = 4.23RR344 pKa = 11.84AWQGRR349 pKa = 11.84RR350 pKa = 11.84ILLNPGKK357 pKa = 10.35GGSIGLAEE365 pKa = 4.0RR366 pKa = 11.84VKK368 pKa = 10.44RR369 pKa = 11.84CRR371 pKa = 11.84DD372 pKa = 3.22RR373 pKa = 11.84SGVSMMLDD381 pKa = 3.24YY382 pKa = 11.46TDD384 pKa = 5.3FNSHH388 pKa = 5.96HH389 pKa = 5.94TTSAQQILIEE399 pKa = 4.33EE400 pKa = 4.54TCALTGYY407 pKa = 9.96PPDD410 pKa = 3.59LTAKK414 pKa = 10.23LVRR417 pKa = 11.84SFEE420 pKa = 4.07LQDD423 pKa = 3.24IYY425 pKa = 11.56LSGKK429 pKa = 9.8RR430 pKa = 11.84VGRR433 pKa = 11.84SAGTLMSGHH442 pKa = 7.01RR443 pKa = 11.84CTTYY447 pKa = 10.57INSVLNMAYY456 pKa = 10.81LMVVLGEE463 pKa = 4.27DD464 pKa = 3.87FVLEE468 pKa = 4.13RR469 pKa = 11.84QSLHH473 pKa = 7.28VGDD476 pKa = 5.16DD477 pKa = 3.73VYY479 pKa = 11.44LGARR483 pKa = 11.84DD484 pKa = 3.83YY485 pKa = 11.23PDD487 pKa = 4.04AGHH490 pKa = 7.54IITEE494 pKa = 4.28VMRR497 pKa = 11.84SPLRR501 pKa = 11.84MNKK504 pKa = 9.08SKK506 pKa = 10.94QSVGHH511 pKa = 6.22VGTEE515 pKa = 3.9LTRR518 pKa = 11.84VASNKK523 pKa = 9.33RR524 pKa = 11.84DD525 pKa = 3.47SFGYY529 pKa = 9.96LARR532 pKa = 11.84ATANLIAGNWYY543 pKa = 9.62SDD545 pKa = 3.35SVMDD549 pKa = 4.5PLEE552 pKa = 4.47GFTTMLAGCRR562 pKa = 11.84TLANRR567 pKa = 11.84GHH569 pKa = 6.15GMKK572 pKa = 10.49APLLLEE578 pKa = 4.26SAVKK582 pKa = 10.47RR583 pKa = 11.84ILGDD587 pKa = 3.7DD588 pKa = 4.22CPDD591 pKa = 3.7DD592 pKa = 4.15ALLRR596 pKa = 11.84RR597 pKa = 11.84ILLGDD602 pKa = 3.31IAVNSGPQYY611 pKa = 9.97SSSGRR616 pKa = 11.84HH617 pKa = 5.01VSIQVKK623 pKa = 10.77AEE625 pKa = 3.68FTTADD630 pKa = 3.47DD631 pKa = 3.98FGYY634 pKa = 11.06SLVPKK639 pKa = 10.27LATTTYY645 pKa = 9.63LSSHH649 pKa = 6.99ASPLEE654 pKa = 3.49IRR656 pKa = 11.84TLTEE660 pKa = 3.82CGIDD664 pKa = 3.54PSPSMVRR671 pKa = 11.84SSWKK675 pKa = 9.28KK676 pKa = 8.75SLRR679 pKa = 11.84IKK681 pKa = 10.32DD682 pKa = 3.41RR683 pKa = 11.84CLEE686 pKa = 3.98RR687 pKa = 11.84LVFGAVTTRR696 pKa = 11.84PARR699 pKa = 11.84GSIRR703 pKa = 11.84AEE705 pKa = 4.2DD706 pKa = 4.29LLKK709 pKa = 10.45QPKK712 pKa = 9.09PHH714 pKa = 6.55GCLLQFPLLVLAKK727 pKa = 10.51DD728 pKa = 4.66RR729 pKa = 11.84IPDD732 pKa = 3.58SEE734 pKa = 4.26LRR736 pKa = 11.84RR737 pKa = 11.84AVSDD741 pKa = 3.13SGGRR745 pKa = 11.84GWVEE749 pKa = 4.46DD750 pKa = 3.86IKK752 pKa = 11.45LEE754 pKa = 4.04AWGEE758 pKa = 3.99YY759 pKa = 8.43HH760 pKa = 7.53PSMIVNTGMSFSDD773 pKa = 3.33AAALSKK779 pKa = 10.43RR780 pKa = 11.84TDD782 pKa = 3.1ISVMTSTRR790 pKa = 11.84RR791 pKa = 11.84CYY793 pKa = 10.31VV794 pKa = 2.8

Molecular weight:
88.21 kDa
Isoelectric point according different methods:






Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

2

0

2

1560

766

794

780.0

84.11

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

11.282 ± 1.53

1.474 ± 0.374

6.026 ± 0.188

4.487 ± 0.119

2.756 ± 0.164

8.974 ± 1.414

2.5 ± 0.361

3.269 ± 0.091

2.821 ± 0.923

8.782 ± 1.155

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.051 ± 0.671

3.077 ± 0.298

6.538 ± 0.95

2.564 ± 0.292

7.5 ± 0.474

7.756 ± 0.471

5.833 ± 0.115

7.692 ± 0.529

1.41 ± 0.157

3.205 ± 0.309

Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski