Algoriella xinjiangensis

Taxonomy: cellular organisms; Bacteria; FCB group; Bacteroidetes/Chlorobi group; Bacteroidetes; Flavobacteriia; Flavobacteriales; Weeksellaceae; Algoriella

Average proteome isoelectric point is 6.44

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 3034 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A1I4WNT3|A0A1I4WNT3_9FLAO Uncharacterized protein OS=Algoriella xinjiangensis OX=684065 GN=SAMN05421738_10784 PE=4 SV=1
MM1 pKa = 8.23DD2 pKa = 5.37FLDD5 pKa = 5.24DD6 pKa = 4.63LLNSSTLPTEE16 pKa = 5.56RR17 pKa = 11.84ISQMLDD23 pKa = 2.77EE24 pKa = 5.06DD25 pKa = 4.9LFWQIIEE32 pKa = 4.43NSLIDD37 pKa = 4.43ADD39 pKa = 4.09NLHH42 pKa = 6.76DD43 pKa = 3.83QEE45 pKa = 5.7KK46 pKa = 9.74YY47 pKa = 10.4LSKK50 pKa = 10.56EE51 pKa = 3.91LEE53 pKa = 4.04NLVAEE58 pKa = 5.12DD59 pKa = 3.85IIGFQLRR66 pKa = 11.84LEE68 pKa = 4.25YY69 pKa = 10.8NLYY72 pKa = 10.64LLHH75 pKa = 6.87TPEE78 pKa = 4.53AWCAACIMNDD88 pKa = 3.52DD89 pKa = 3.98TDD91 pKa = 3.72VHH93 pKa = 7.11HH94 pKa = 7.19FFYY97 pKa = 10.55FKK99 pKa = 10.62SWVISQGQEE108 pKa = 3.78MFEE111 pKa = 4.09KK112 pKa = 10.36TILHH116 pKa = 7.04PDD118 pKa = 3.08NLAEE122 pKa = 4.22YY123 pKa = 9.96FDD125 pKa = 5.0EE126 pKa = 5.73GFNDD130 pKa = 3.46DD131 pKa = 5.3DD132 pKa = 5.11LYY134 pKa = 11.49EE135 pKa = 4.19FEE137 pKa = 4.82NFNMIADD144 pKa = 3.58NVFYY148 pKa = 10.76EE149 pKa = 4.22KK150 pKa = 10.58FEE152 pKa = 4.25HH153 pKa = 7.1KK154 pKa = 10.37IIDD157 pKa = 4.64FIDD160 pKa = 3.44KK161 pKa = 10.91NFFQYY166 pKa = 9.22LTQNSPKK173 pKa = 10.35PEE175 pKa = 4.09FDD177 pKa = 3.29WDD179 pKa = 4.1DD180 pKa = 3.67EE181 pKa = 4.4NLASLQAICPTLFQIFVEE199 pKa = 5.05DD200 pKa = 3.96YY201 pKa = 10.4SPEE204 pKa = 4.44DD205 pKa = 3.41EE206 pKa = 6.19DD207 pKa = 5.73YY208 pKa = 11.59DD209 pKa = 5.01DD210 pKa = 6.18EE211 pKa = 4.75EE212 pKa = 6.77DD213 pKa = 4.48EE214 pKa = 6.04DD215 pKa = 5.69FDD217 pKa = 6.37DD218 pKa = 4.61EE219 pKa = 4.55

Molecular weight: 26.25 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A1I4T8E4|A0A1I4T8E4_9FLAO Pyrroline-5-carboxylate reductase OS=Algoriella xinjiangensis OX=684065 GN=proC PE=3 SV=1
MM1 pKa = 7.69SKK3 pKa = 9.01RR4 pKa = 11.84TFQPSNRR11 pKa = 11.84KK12 pKa = 8.86KK13 pKa = 10.03RR14 pKa = 11.84NKK16 pKa = 9.59HH17 pKa = 4.05GFRR20 pKa = 11.84EE21 pKa = 4.13RR22 pKa = 11.84MASKK26 pKa = 10.54NGRR29 pKa = 11.84KK30 pKa = 8.98ILAARR35 pKa = 11.84RR36 pKa = 11.84KK37 pKa = 8.89KK38 pKa = 10.28GRR40 pKa = 11.84AAVSISDD47 pKa = 3.57VRR49 pKa = 11.84AKK51 pKa = 10.51RR52 pKa = 3.37

Molecular weight: 6.07 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

3034

0

3034

983139

31

2411

324.0

36.77

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

5.997 ± 0.047

0.676 ± 0.013

5.666 ± 0.032

6.683 ± 0.045

5.428 ± 0.034

5.955 ± 0.04

1.608 ± 0.02

8.484 ± 0.045

8.378 ± 0.043

9.102 ± 0.046

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.177 ± 0.021

6.823 ± 0.048

3.144 ± 0.023

3.685 ± 0.028

3.069 ± 0.027

6.179 ± 0.033

5.668 ± 0.034

6.031 ± 0.035

0.956 ± 0.014

4.291 ± 0.031
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski