Uncia uncia papillomavirus type 1

Taxonomy: Viruses; Monodnaviria; Shotokuvirae; Cossaviricota; Papovaviricetes; Zurhausenvirales; Papillomaviridae; Firstpapillomavirinae; Lambdapapillomavirus; Lambdapapillomavirus 1

Average proteome isoelectric point is 6.26

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 7 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A4Z4U0|A4Z4U0_9PAPI Replication protein E1 OS=Uncia uncia papillomavirus type 1 OX=348686 GN=E1 PE=3 SV=1
MM1 pKa = 7.57IGVAPTIGDD10 pKa = 3.31IVLTEE15 pKa = 4.1QPPEE19 pKa = 4.2TVDD22 pKa = 3.44LRR24 pKa = 11.84CYY26 pKa = 9.66EE27 pKa = 3.96QMPGEE32 pKa = 4.11EE33 pKa = 4.25EE34 pKa = 4.39EE35 pKa = 4.43EE36 pKa = 4.38VEE38 pKa = 4.33SQSRR42 pKa = 11.84DD43 pKa = 3.35LYY45 pKa = 10.81RR46 pKa = 11.84VSAYY50 pKa = 10.47CGLCGSGVRR59 pKa = 11.84FACLAGGEE67 pKa = 4.14DD68 pKa = 4.46LLRR71 pKa = 11.84SLLSSVQFVCVSCVNHH87 pKa = 6.03QKK89 pKa = 10.67LNHH92 pKa = 6.28GGG94 pKa = 3.37

Molecular weight: 10.19 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A4Z4U2|A4Z4U2_9PAPI E4 (Fragment) OS=Uncia uncia papillomavirus type 1 OX=348686 GN=E4 PE=4 SV=1
MM1 pKa = 7.49EE2 pKa = 4.93NVSKK6 pKa = 10.77ALEE9 pKa = 4.26SVQEE13 pKa = 3.97QLLALYY19 pKa = 9.53EE20 pKa = 4.29KK21 pKa = 10.7DD22 pKa = 3.46SAEE25 pKa = 3.71LTEE28 pKa = 6.04QIRR31 pKa = 11.84HH32 pKa = 4.63WNLNRR37 pKa = 11.84RR38 pKa = 11.84EE39 pKa = 3.95QVLYY43 pKa = 10.79YY44 pKa = 9.81SARR47 pKa = 11.84QQGITRR53 pKa = 11.84IGMNPVPSLAAAQHH67 pKa = 5.91KK68 pKa = 10.06AKK70 pKa = 10.59AAIEE74 pKa = 3.95QEE76 pKa = 4.01LLLRR80 pKa = 11.84SLLDD84 pKa = 3.15SGFAGEE90 pKa = 5.08PWTLMDD96 pKa = 3.84TSRR99 pKa = 11.84EE100 pKa = 3.83RR101 pKa = 11.84LLADD105 pKa = 3.94PPYY108 pKa = 9.84CFKK111 pKa = 11.07KK112 pKa = 10.47GGQQVEE118 pKa = 4.26VRR120 pKa = 11.84FDD122 pKa = 3.45NDD124 pKa = 3.19RR125 pKa = 11.84EE126 pKa = 4.29NVSRR130 pKa = 11.84YY131 pKa = 8.34VLWTDD136 pKa = 4.09IYY138 pKa = 10.66HH139 pKa = 5.36QTASDD144 pKa = 3.54DD145 pKa = 3.26WRR147 pKa = 11.84KK148 pKa = 7.77TRR150 pKa = 11.84GQADD154 pKa = 3.43NRR156 pKa = 11.84GLYY159 pKa = 9.9YY160 pKa = 10.48VDD162 pKa = 3.26EE163 pKa = 5.3KK164 pKa = 11.26GVKK167 pKa = 9.2SYY169 pKa = 11.37YY170 pKa = 10.45VDD172 pKa = 4.83FEE174 pKa = 4.27QEE176 pKa = 3.59AKK178 pKa = 10.75KK179 pKa = 10.41FGKK182 pKa = 8.02TGHH185 pKa = 5.72YY186 pKa = 10.37AIVSKK191 pKa = 9.68LTTPVPTSTTGSGLGDD207 pKa = 3.6SSSSGAATASGAPKK221 pKa = 10.12KK222 pKa = 8.23QTPTKK227 pKa = 8.36TRR229 pKa = 11.84KK230 pKa = 9.4RR231 pKa = 11.84LLRR234 pKa = 11.84LSSPKK239 pKa = 8.17TTGSRR244 pKa = 11.84FRR246 pKa = 11.84RR247 pKa = 11.84GGGGGGKK254 pKa = 9.12RR255 pKa = 11.84DD256 pKa = 4.14LEE258 pKa = 4.49TSTLRR263 pKa = 11.84PVPPTPEE270 pKa = 4.05EE271 pKa = 4.04VGKK274 pKa = 10.21LATSVPRR281 pKa = 11.84GSGGRR286 pKa = 11.84LGRR289 pKa = 11.84LLHH292 pKa = 6.18EE293 pKa = 5.0ARR295 pKa = 11.84DD296 pKa = 3.9PPILVLKK303 pKa = 10.46GDD305 pKa = 4.24PNSLKK310 pKa = 9.42CTRR313 pKa = 11.84YY314 pKa = 9.34RR315 pKa = 11.84LKK317 pKa = 10.89GKK319 pKa = 10.58YY320 pKa = 9.69SDD322 pKa = 3.9LFCRR326 pKa = 11.84ASTTWQWTSSTGTDD340 pKa = 2.18RR341 pKa = 11.84WGRR344 pKa = 11.84SRR346 pKa = 11.84MLLTFADD353 pKa = 4.23RR354 pKa = 11.84EE355 pKa = 4.15QRR357 pKa = 11.84DD358 pKa = 3.91LFEE361 pKa = 4.69KK362 pKa = 9.71TVKK365 pKa = 10.32LPKK368 pKa = 9.6SVSYY372 pKa = 10.46FRR374 pKa = 11.84GFLEE378 pKa = 4.91DD379 pKa = 3.63LL380 pKa = 4.14

Molecular weight: 42.67 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

7

0

7

2339

94

606

334.1

37.32

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

6.156 ± 0.645

2.522 ± 0.795

5.772 ± 0.437

6.541 ± 0.45

4.404 ± 0.731

6.883 ± 0.653

1.582 ± 0.177

3.378 ± 0.804

5.344 ± 0.924

10.261 ± 0.826

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

1.368 ± 0.287

3.206 ± 0.744

6.755 ± 1.364

4.703 ± 0.391

6.584 ± 0.767

7.824 ± 1.096

5.985 ± 0.57

6.712 ± 0.712

1.368 ± 0.378

2.651 ± 0.314
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski