Spodoptera exigua multiple nucleopolyhedrovirus

Taxonomy: Viruses; Naldaviricetes; Lefavirales; Baculoviridae; Alphabaculovirus

Average proteome isoelectric point is 6.64

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 135 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|Q9J833|Q9J833_9ABAC ORF104 OS=Spodoptera exigua multiple nucleopolyhedrovirus OX=10454 GN=HTSEG24_101 PE=4 SV=1
MM1 pKa = 7.4SSVSIANDD9 pKa = 3.04VLNAILSDD17 pKa = 3.75NLEE20 pKa = 5.13LIDD23 pKa = 5.22DD24 pKa = 4.31SYY26 pKa = 11.78IILNVVDD33 pKa = 4.76HH34 pKa = 6.81EE35 pKa = 4.9SSGGTIKK42 pKa = 10.21PVCIGEE48 pKa = 4.17INSFQTNQSDD58 pKa = 4.15KK59 pKa = 10.98YY60 pKa = 8.88PVSDD64 pKa = 3.58SSVSSEE70 pKa = 4.05LQSDD74 pKa = 3.58QTLL77 pKa = 3.3

Molecular weight: 8.26 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|Q9J891|Q9J891_9ABAC ORF44 OS=Spodoptera exigua multiple nucleopolyhedrovirus OX=10454 PE=4 SV=1
MM1 pKa = 7.43WLISKK6 pKa = 9.66KK7 pKa = 10.49CQDD10 pKa = 3.03INVSVFFDD18 pKa = 3.43QFCVMWVSADD28 pKa = 3.77DD29 pKa = 3.83VLHH32 pKa = 6.85LLRR35 pKa = 11.84LPASTLQNIPQRR47 pKa = 11.84HH48 pKa = 5.15KK49 pKa = 10.79KK50 pKa = 9.17CWVDD54 pKa = 4.55FRR56 pKa = 11.84CPHH59 pKa = 6.33HH60 pKa = 6.92CSHH63 pKa = 7.74DD64 pKa = 3.63GGKK67 pKa = 9.99VFIDD71 pKa = 4.44LYY73 pKa = 11.61GLGNLCNRR81 pKa = 11.84VNSQIADD88 pKa = 3.48YY89 pKa = 11.33LMTVFVAEE97 pKa = 4.49SYY99 pKa = 10.69NEE101 pKa = 3.59RR102 pKa = 11.84RR103 pKa = 11.84RR104 pKa = 11.84DD105 pKa = 3.35SRR107 pKa = 11.84RR108 pKa = 11.84SFSPRR113 pKa = 11.84RR114 pKa = 11.84RR115 pKa = 11.84SHH117 pKa = 4.85SPRR120 pKa = 11.84RR121 pKa = 11.84RR122 pKa = 11.84SPSPRR127 pKa = 11.84RR128 pKa = 11.84RR129 pKa = 11.84SPSPRR134 pKa = 11.84RR135 pKa = 11.84RR136 pKa = 11.84SRR138 pKa = 11.84SRR140 pKa = 11.84SGGGGAGRR148 pKa = 11.84RR149 pKa = 11.84RR150 pKa = 11.84SSSRR154 pKa = 11.84CCPRR158 pKa = 11.84RR159 pKa = 11.84HH160 pKa = 5.82HH161 pKa = 6.35HH162 pKa = 6.13HH163 pKa = 6.5HH164 pKa = 6.37HH165 pKa = 6.01HH166 pKa = 6.37HH167 pKa = 5.66HH168 pKa = 6.44TEE170 pKa = 3.54LLEE173 pKa = 4.81RR174 pKa = 11.84ITRR177 pKa = 11.84QNDD180 pKa = 4.15LILTSVNQLTVTNANQHH197 pKa = 6.26LEE199 pKa = 3.92LSNILNALRR208 pKa = 11.84LQQTTIAGQVAQILEE223 pKa = 4.42TVEE226 pKa = 3.97GLGDD230 pKa = 3.28ITGDD234 pKa = 3.48FTRR237 pKa = 11.84LLAEE241 pKa = 4.63LDD243 pKa = 3.43TRR245 pKa = 11.84LAALSTTILNAINQLSDD262 pKa = 3.16QLRR265 pKa = 11.84NEE267 pKa = 3.94LTGINSVLNNLSSSVTNINATLNNLLQAINGLNLGTVVGEE307 pKa = 4.05LQQTINTILDD317 pKa = 4.09LLQTILGILQPNIPLNKK334 pKa = 9.73KK335 pKa = 9.61

Molecular weight: 37.9 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

135

0

135

39664

57

1222

293.8

33.88

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

5.115 ± 0.19

2.224 ± 0.129

7.319 ± 0.251

5.065 ± 0.116

4.856 ± 0.141

3.477 ± 0.153

2.327 ± 0.103

6.837 ± 0.133

6.593 ± 0.287

8.728 ± 0.198

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.753 ± 0.102

7.558 ± 0.168

3.515 ± 0.188

3.457 ± 0.179

5.206 ± 0.148

6.648 ± 0.199

5.695 ± 0.165

7.092 ± 0.153

0.711 ± 0.054

4.823 ± 0.141
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski