Porphyromonas sp. oral taxon 279 str. F0450

Taxonomy: cellular organisms; Bacteria; FCB group; Bacteroidetes/Chlorobi group; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Porphyromonas; unclassified Porphyromonas; Porphyromonas sp. oral taxon 279

Average proteome isoelectric point is 6.54

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 1729 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|J6GYR0|J6GYR0_9PORP Uncharacterized protein OS=Porphyromonas sp. oral taxon 279 str. F0450 OX=1125723 GN=HMPREF1323_1005 PE=4 SV=1
MM1 pKa = 7.56GNCSLASLGKK11 pKa = 9.11PLPINIMVEE20 pKa = 4.16DD21 pKa = 4.29EE22 pKa = 4.21LLGYY26 pKa = 10.77DD27 pKa = 3.9DD28 pKa = 4.01TASVAFIRR36 pKa = 11.84NYY38 pKa = 9.66IPQEE42 pKa = 3.94LKK44 pKa = 10.88EE45 pKa = 4.52LLSDD49 pKa = 3.78DD50 pKa = 4.98DD51 pKa = 3.41IVYY54 pKa = 9.89FVDD57 pKa = 6.12LIYY60 pKa = 10.54DD61 pKa = 3.81YY62 pKa = 11.34YY63 pKa = 10.93EE64 pKa = 4.07SRR66 pKa = 11.84GYY68 pKa = 11.14LSDD71 pKa = 5.79DD72 pKa = 3.67DD73 pKa = 4.68TDD75 pKa = 4.04DD76 pKa = 4.27EE77 pKa = 4.59EE78 pKa = 6.52PIEE81 pKa = 4.26IDD83 pKa = 3.0EE84 pKa = 5.18DD85 pKa = 3.96EE86 pKa = 4.48LVDD89 pKa = 3.77YY90 pKa = 9.87VVRR93 pKa = 11.84NAQKK97 pKa = 10.87DD98 pKa = 4.08GVGKK102 pKa = 9.34FAPDD106 pKa = 3.12QIRR109 pKa = 11.84FVVQGEE115 pKa = 4.24LEE117 pKa = 4.18YY118 pKa = 11.3CEE120 pKa = 5.06SINLFDD126 pKa = 4.14

Molecular weight: 14.42 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|J6H436|J6H436_9PORP EamA-like transporter family protein OS=Porphyromonas sp. oral taxon 279 str. F0450 OX=1125723 GN=HMPREF1323_0975 PE=4 SV=1
MM1 pKa = 6.83NTQAMNHH8 pKa = 6.7DD9 pKa = 3.56PHH11 pKa = 8.45SPVFIRR17 pKa = 11.84GKK19 pKa = 10.46ASPDD23 pKa = 3.29KK24 pKa = 9.04QTKK27 pKa = 8.94GQVSPSRR34 pKa = 11.84FVDD37 pKa = 2.87WRR39 pKa = 11.84RR40 pKa = 11.84IIEE43 pKa = 4.19LALLLTLVVAAVYY56 pKa = 10.0LISRR60 pKa = 11.84VVTPQVVTIVGVIAGFLLLRR80 pKa = 11.84FVVRR84 pKa = 11.84TILQVTFTILGYY96 pKa = 10.16LLWLAIFVAILICILL111 pKa = 3.56

Molecular weight: 12.4 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

1729

0

1729

641230

36

2373

370.9

41.42

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

8.595 ± 0.052

0.868 ± 0.02

5.284 ± 0.036

6.656 ± 0.063

4.016 ± 0.034

7.266 ± 0.042

2.164 ± 0.029

5.936 ± 0.043

4.891 ± 0.047

10.655 ± 0.064

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.126 ± 0.026

3.235 ± 0.05

4.432 ± 0.032

3.657 ± 0.029

6.196 ± 0.047

6.701 ± 0.046

5.949 ± 0.044

6.12 ± 0.04

1.096 ± 0.019

4.158 ± 0.045
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski