Desulfuromonas soudanensis

Taxonomy: cellular organisms; Bacteria; Proteobacteria; delta/epsilon subdivisions; Deltaproteobacteria; Desulfuromonadales; Desulfuromonadaceae; Desulfuromonas

Average proteome isoelectric point is 6.41

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 3469 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A0M3QFF4|A0A0M3QFF4_9DELT Autotransporter assembly factor TamA OS=Desulfuromonas soudanensis OX=1603606 GN=DSOUD_1192 PE=3 SV=1
MM1 pKa = 7.56SNLTPSPVIDD11 pKa = 4.72AGTDD15 pKa = 3.25QYY17 pKa = 12.07ALTGKK22 pKa = 9.5VVNLAGTSYY31 pKa = 11.32DD32 pKa = 3.6SAGGPLTYY40 pKa = 10.13QWNLVSTPSGSATTLSGANTLTPSFTADD68 pKa = 3.25LPGDD72 pKa = 3.83YY73 pKa = 10.49VLSLLADD80 pKa = 4.36DD81 pKa = 6.42GEE83 pKa = 4.65LQSQTDD89 pKa = 4.06TVTVHH94 pKa = 6.88ANVINCTFDD103 pKa = 3.38NPATLGMSGVIEE115 pKa = 4.18TSLSGDD121 pKa = 3.35IVPLCDD127 pKa = 3.43GWVLSANTTDD137 pKa = 5.03NRR139 pKa = 11.84VEE141 pKa = 3.98LQNVFTEE148 pKa = 4.12EE149 pKa = 4.19FEE151 pKa = 4.7RR152 pKa = 11.84SVSVDD157 pKa = 2.94GAVRR161 pKa = 11.84DD162 pKa = 3.84MEE164 pKa = 4.91FDD166 pKa = 3.99DD167 pKa = 5.75EE168 pKa = 5.21SGLLYY173 pKa = 10.42AVKK176 pKa = 10.28KK177 pKa = 9.93DD178 pKa = 3.57LPSISRR184 pKa = 11.84VDD186 pKa = 3.76MQAGTANLIPLPSLPLDD203 pKa = 3.8LALGGSNKK211 pKa = 9.91LFVSLRR217 pKa = 11.84SDD219 pKa = 3.5PLNIYY224 pKa = 10.55ADD226 pKa = 3.75YY227 pKa = 11.44SSISLVNGATGSVLKK242 pKa = 9.05TWPDD246 pKa = 3.18TSFSADD252 pKa = 3.97SILLAYY258 pKa = 9.92DD259 pKa = 3.63RR260 pKa = 11.84SGQQLVAGEE269 pKa = 4.2VWINPAEE276 pKa = 4.25LKK278 pKa = 10.41RR279 pKa = 11.84YY280 pKa = 10.09AFDD283 pKa = 4.06EE284 pKa = 4.78GALTLNLVDD293 pKa = 3.17QRR295 pKa = 11.84GYY297 pKa = 11.12VGTSAGDD304 pKa = 3.58LQISPDD310 pKa = 3.28GRR312 pKa = 11.84HH313 pKa = 5.71AAFTTGSGNGSVNPYY328 pKa = 9.79TIFDD332 pKa = 4.66FSTDD336 pKa = 3.31DD337 pKa = 3.28FGTVYY342 pKa = 11.09GEE344 pKa = 4.23WDD346 pKa = 3.14TDD348 pKa = 3.59AYY350 pKa = 9.42PLSGSFSPDD359 pKa = 2.17GNYY362 pKa = 9.37FVATNGSAIQLFDD375 pKa = 3.65VANHH379 pKa = 6.26NLLAEE384 pKa = 4.38YY385 pKa = 9.55PVSCNGLLEE394 pKa = 4.43TEE396 pKa = 4.18MVTRR400 pKa = 11.84FSRR403 pKa = 11.84GGNILFAYY411 pKa = 6.82GTCTGASSSTGRR423 pKa = 11.84IFWQVIEE430 pKa = 4.18PP431 pKa = 3.79

Molecular weight: 45.72 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A0M3QER3|A0A0M3QER3_9DELT Chromosomal replication initiator protein DnaA OS=Desulfuromonas soudanensis OX=1603606 GN=dnaA PE=3 SV=1
MM1 pKa = 7.35KK2 pKa = 9.43RR3 pKa = 11.84TYY5 pKa = 10.31QPSKK9 pKa = 9.13VKK11 pKa = 10.4RR12 pKa = 11.84KK13 pKa = 7.77RR14 pKa = 11.84THH16 pKa = 5.86GFRR19 pKa = 11.84KK20 pKa = 10.09RR21 pKa = 11.84MQTKK25 pKa = 9.99NGQSVLKK32 pKa = 10.26RR33 pKa = 11.84RR34 pKa = 11.84RR35 pKa = 11.84AKK37 pKa = 10.05GRR39 pKa = 11.84KK40 pKa = 8.49ILAATIPVKK49 pKa = 10.79

Molecular weight: 5.82 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

3469

0

3469

1153148

40

4379

332.4

36.45

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

10.067 ± 0.059

1.163 ± 0.023

5.223 ± 0.037

6.761 ± 0.054

4.074 ± 0.031

8.659 ± 0.048

1.964 ± 0.023

5.426 ± 0.039

3.958 ± 0.047

11.457 ± 0.059

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.138 ± 0.019

2.862 ± 0.045

4.9 ± 0.03

3.084 ± 0.025

6.815 ± 0.059

5.471 ± 0.033

5.156 ± 0.061

7.205 ± 0.036

1.042 ± 0.018

2.578 ± 0.023
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski