Mycolicibacterium vanbaalenii (strain DSM 7251 / JCM 13017 / BCRC 16820 / KCTC 9966 / NRRL B-24157 / PYR-1) (Mycobacterium vanbaalenii)

Taxonomy: cellular organisms; Bacteria; Terrabacteria group; Actinobacteria; Actinomycetia; Corynebacteriales; Mycobacteriaceae; Mycolicibacterium; Mycolicibacterium vanbaalenii

Average proteome isoelectric point is 5.97

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 5902 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>sp|A1TBY9|RS20_MYCVP 30S ribosomal protein S20 OS=Mycolicibacterium vanbaalenii (strain DSM 7251 / JCM 13017 / BCRC 16820 / KCTC 9966 / NRRL B-24157 / PYR-1) OX=350058 GN=rpsT PE=3 SV=1
MM1 pKa = 7.94ADD3 pKa = 3.28NGLVNNVGAVRR14 pKa = 11.84CAYY17 pKa = 10.32AAGAGLAASVLLCACVSTVEE37 pKa = 4.42GAAVRR42 pKa = 11.84HH43 pKa = 6.18PGAATLDD50 pKa = 3.7VPPLDD55 pKa = 3.69EE56 pKa = 4.75AALDD60 pKa = 3.89RR61 pKa = 11.84VLLSVDD67 pKa = 3.6EE68 pKa = 4.95LNSIMGSIRR77 pKa = 11.84MKK79 pKa = 10.56VSSEE83 pKa = 3.61LDD85 pKa = 3.08EE86 pKa = 4.6MTDD89 pKa = 3.19HH90 pKa = 6.36TAEE93 pKa = 4.12VSNPDD98 pKa = 3.44CLGTVYY104 pKa = 10.62AAEE107 pKa = 4.23EE108 pKa = 3.75PAYY111 pKa = 10.44AGTGWTAVRR120 pKa = 11.84DD121 pKa = 3.92QVARR125 pKa = 11.84EE126 pKa = 3.73PDD128 pKa = 3.39GDD130 pKa = 3.64NDD132 pKa = 3.26HH133 pKa = 6.83WVEE136 pKa = 4.22QTAVIYY142 pKa = 9.02PAARR146 pKa = 11.84NAQDD150 pKa = 3.28FFDD153 pKa = 4.45RR154 pKa = 11.84SSVTWQDD161 pKa = 3.31CANATITTGDD171 pKa = 3.54GDD173 pKa = 4.53YY174 pKa = 11.05LWEE177 pKa = 4.86LDD179 pKa = 3.62AAQVDD184 pKa = 4.52DD185 pKa = 3.98TVLTQRR191 pKa = 11.84VTQDD195 pKa = 3.33GADD198 pKa = 3.23GWACQHH204 pKa = 6.37ALSVVSNLTVEE215 pKa = 4.73AWACGYY221 pKa = 10.51SISDD225 pKa = 3.54EE226 pKa = 4.02AAEE229 pKa = 4.21IAVAMIEE236 pKa = 4.13NAATKK241 pKa = 10.35

Molecular weight: 25.39 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A1T140|A1T140_MYCVP Uncharacterized protein OS=Mycolicibacterium vanbaalenii (strain DSM 7251 / JCM 13017 / BCRC 16820 / KCTC 9966 / NRRL B-24157 / PYR-1) OX=350058 GN=Mvan_0039 PE=4 SV=1
MM1 pKa = 7.69AKK3 pKa = 10.06GKK5 pKa = 8.69RR6 pKa = 11.84TFQPNNRR13 pKa = 11.84RR14 pKa = 11.84RR15 pKa = 11.84AKK17 pKa = 9.45VHH19 pKa = 5.31GFRR22 pKa = 11.84LRR24 pKa = 11.84MRR26 pKa = 11.84TRR28 pKa = 11.84AGRR31 pKa = 11.84AIVTARR37 pKa = 11.84RR38 pKa = 11.84AKK40 pKa = 10.16GRR42 pKa = 11.84RR43 pKa = 11.84SLTAA47 pKa = 3.9

Molecular weight: 5.46 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

5902

0

5902

1947808

32

3696

330.0

35.4

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

13.069 ± 0.04

0.826 ± 0.008

6.447 ± 0.027

5.329 ± 0.027

3.052 ± 0.02

8.933 ± 0.037

2.184 ± 0.017

4.139 ± 0.02

2.081 ± 0.02

9.718 ± 0.031

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.057 ± 0.015

2.156 ± 0.016

5.853 ± 0.028

2.904 ± 0.016

7.296 ± 0.037

5.374 ± 0.022

6.121 ± 0.024

8.857 ± 0.03

1.5 ± 0.014

2.103 ± 0.016
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski