Lysinimonas sp. KACC 19322

Taxonomy: cellular organisms; Bacteria; Terrabacteria group; Actinobacteria; Actinomycetia; Micrococcales; Microbacteriaceae; Protaetiibacter

Average proteome isoelectric point is 6.15

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 2341 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A5C1Y5L6|A0A5C1Y5L6_9MICO Uncharacterized protein OS=Lysinimonas sp. KACC 19322 OX=2592654 GN=FLP23_03645 PE=4 SV=1
MM1 pKa = 7.28SASPTSRR8 pKa = 11.84RR9 pKa = 11.84RR10 pKa = 11.84SYY12 pKa = 11.5AGIAVAAFLATALTACFPGGGDD34 pKa = 3.42SKK36 pKa = 11.52SGGGVSYY43 pKa = 10.92DD44 pKa = 4.0GEE46 pKa = 4.69DD47 pKa = 3.37SAAVQSATIQFSGQGTFVEE66 pKa = 5.19PDD68 pKa = 3.4TIDD71 pKa = 3.49PAEE74 pKa = 4.04YY75 pKa = 8.97RR76 pKa = 11.84WSGSGFFITSDD87 pKa = 3.99GIAVTNNHH95 pKa = 5.51VVTGAGSLSVTIGGEE110 pKa = 3.98GDD112 pKa = 3.72SYY114 pKa = 10.64PVRR117 pKa = 11.84VLSTSEE123 pKa = 4.02CLDD126 pKa = 3.33IAVVQVDD133 pKa = 3.17VDD135 pKa = 3.79KK136 pKa = 10.81PVPYY140 pKa = 10.35FDD142 pKa = 3.34WAEE145 pKa = 4.11GKK147 pKa = 10.13ISTGSDD153 pKa = 3.49VYY155 pKa = 11.69ALGYY159 pKa = 9.59PLGDD163 pKa = 3.57PTFSMTKK170 pKa = 9.21GAVVKK175 pKa = 10.44SDD177 pKa = 3.4YY178 pKa = 11.68AFDD181 pKa = 3.65TFDD184 pKa = 3.32NVVAHH189 pKa = 7.2GIQSDD194 pKa = 3.52AAIRR198 pKa = 11.84GGNSGGPLINEE209 pKa = 4.06KK210 pKa = 10.8GKK212 pKa = 10.03VVGVNFYY219 pKa = 11.58GNDD222 pKa = 3.23NLATSNYY229 pKa = 10.33AIGRR233 pKa = 11.84DD234 pKa = 3.59DD235 pKa = 4.19VLPVLDD241 pKa = 4.84DD242 pKa = 4.34LKK244 pKa = 11.05AGKK247 pKa = 9.82SVLSLGLNLSALTTDD262 pKa = 4.09DD263 pKa = 4.47PYY265 pKa = 11.47GLSGIWVQSVAEE277 pKa = 4.56GSAADD282 pKa = 3.77KK283 pKa = 11.24AGIEE287 pKa = 4.37PGDD290 pKa = 3.76VLQKK294 pKa = 10.99LGGVTLAGASSLSQFEE310 pKa = 4.35NTTEE314 pKa = 3.99GTMKK318 pKa = 10.54NYY320 pKa = 10.39CQVLQTKK327 pKa = 10.24GVDD330 pKa = 3.35APMGAVVYY338 pKa = 10.49RR339 pKa = 11.84PATDD343 pKa = 3.27EE344 pKa = 4.11LLEE347 pKa = 4.16GEE349 pKa = 4.86INGSDD354 pKa = 4.22PIEE357 pKa = 4.15VTASGVLGGGGDD369 pKa = 3.8GGNVSSGYY377 pKa = 9.14TDD379 pKa = 3.08IVSDD383 pKa = 4.27DD384 pKa = 3.32YY385 pKa = 11.37RR386 pKa = 11.84IAVTVPAEE394 pKa = 4.06WNQVATTPGAGEE406 pKa = 4.21TLLQASSDD414 pKa = 3.62LGSFGSLAAPGVEE427 pKa = 4.18LHH429 pKa = 5.95STDD432 pKa = 3.8YY433 pKa = 10.8QALGAPADD441 pKa = 4.05VIATLDD447 pKa = 3.85LGLTNLGCTPSSGQIDD463 pKa = 3.61QDD465 pKa = 4.13YY466 pKa = 11.69ADD468 pKa = 4.1GQYY471 pKa = 10.97SGLFSVYY478 pKa = 9.36TSCPTGADD486 pKa = 2.95AVVVVVDD493 pKa = 4.87ADD495 pKa = 3.51NGDD498 pKa = 3.24ASGYY502 pKa = 10.77LLILGTFGDD511 pKa = 4.58YY512 pKa = 10.82ASSDD516 pKa = 3.54PGVLKK521 pKa = 10.81VLNTFTLSS529 pKa = 3.14

Molecular weight: 53.88 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A5C1YCP6|A0A5C1YCP6_9MICO ABC transporter ATP-binding protein OS=Lysinimonas sp. KACC 19322 OX=2592654 GN=FLP23_10960 PE=4 SV=1
MM1 pKa = 7.44TIKK4 pKa = 10.42PSRR7 pKa = 11.84VSVRR11 pKa = 11.84PRR13 pKa = 11.84PTGRR17 pKa = 11.84PIRR20 pKa = 11.84GHH22 pKa = 5.36RR23 pKa = 11.84PRR25 pKa = 11.84RR26 pKa = 11.84PRR28 pKa = 11.84GPGRR32 pKa = 11.84RR33 pKa = 11.84GRR35 pKa = 11.84ARR37 pKa = 11.84RR38 pKa = 11.84RR39 pKa = 11.84RR40 pKa = 11.84GGRR43 pKa = 11.84GTRR46 pKa = 11.84RR47 pKa = 11.84RR48 pKa = 11.84GRR50 pKa = 11.84GQRR53 pKa = 11.84WGSWVVQTKK62 pKa = 10.09RR63 pKa = 11.84EE64 pKa = 4.09PGRR67 pKa = 11.84DD68 pKa = 3.02AGATSRR74 pKa = 11.84EE75 pKa = 4.21ATGLGLWARR84 pKa = 11.84RR85 pKa = 11.84RR86 pKa = 11.84GVAAAWRR93 pKa = 11.84GRR95 pKa = 11.84PGRR98 pKa = 11.84TRR100 pKa = 11.84AGLRR104 pKa = 11.84RR105 pKa = 11.84RR106 pKa = 11.84HH107 pKa = 5.92RR108 pKa = 11.84SS109 pKa = 2.98

Molecular weight: 12.48 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

2341

0

2341

777487

26

9623

332.1

35.44

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

14.014 ± 0.1

0.437 ± 0.012

5.917 ± 0.042

5.79 ± 0.068

3.13 ± 0.035

9.16 ± 0.076

1.895 ± 0.026

4.521 ± 0.038

1.874 ± 0.037

10.471 ± 0.077

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

1.438 ± 0.023

1.841 ± 0.025

5.591 ± 0.053

2.638 ± 0.03

7.539 ± 0.086

5.355 ± 0.055

5.806 ± 0.082

9.101 ± 0.053

1.504 ± 0.023

1.975 ± 0.025
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski