Prevotella bergensis DSM 17361

Taxonomy: cellular organisms; Bacteria; FCB group; Bacteroidetes/Chlorobi group; Bacteroidetes; Bacteroidia; Bacteroidales; Prevotellaceae; Prevotella; Prevotella bergensis

Average proteome isoelectric point is 6.82

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 2824 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|D1PXM4|D1PXM4_9BACT Polysaccharide biosynthesis protein OS=Prevotella bergensis DSM 17361 OX=585502 GN=HMPREF0645_1709 PE=4 SV=1
MM1 pKa = 7.69RR2 pKa = 11.84MKK4 pKa = 10.54KK5 pKa = 9.83ISTNVFVILLAVAPILFASCGSDD28 pKa = 3.88PVYY31 pKa = 10.61TDD33 pKa = 2.85PWYY36 pKa = 10.19DD37 pKa = 3.04DD38 pKa = 3.6WTWGDD43 pKa = 4.81DD44 pKa = 3.65YY45 pKa = 11.49SQRR48 pKa = 11.84PSDD51 pKa = 4.63DD52 pKa = 3.54NVSDD56 pKa = 3.74EE57 pKa = 4.61DD58 pKa = 4.26FLVSMAQTLAGQWRR72 pKa = 11.84GDD74 pKa = 3.39MMAYY78 pKa = 10.1EE79 pKa = 4.84IDD81 pKa = 3.66NAGNAIDD88 pKa = 4.09SIYY91 pKa = 10.63YY92 pKa = 8.5KK93 pKa = 10.41TDD95 pKa = 3.09IEE97 pKa = 4.41FKK99 pKa = 10.32QYY101 pKa = 10.31NRR103 pKa = 11.84QSISGTGTQYY113 pKa = 11.39DD114 pKa = 3.76FHH116 pKa = 7.61PDD118 pKa = 3.37TEE120 pKa = 4.25EE121 pKa = 5.98LEE123 pKa = 4.28LQRR126 pKa = 11.84DD127 pKa = 4.21FTWYY131 pKa = 10.56VDD133 pKa = 3.67PKK135 pKa = 11.03SGDD138 pKa = 3.17VYY140 pKa = 9.26MTT142 pKa = 4.05

Molecular weight: 16.41 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|D1PTC4|D1PTC4_9BACT Transporter gate domain protein OS=Prevotella bergensis DSM 17361 OX=585502 GN=HMPREF0645_0209 PE=4 SV=1
MM1 pKa = 7.6NIFDD5 pKa = 4.86HH6 pKa = 6.14VCKK9 pKa = 10.67NCIYY13 pKa = 11.19ALITHH18 pKa = 6.65EE19 pKa = 4.26SHH21 pKa = 7.29RR22 pKa = 11.84LLHH25 pKa = 6.3LRR27 pKa = 11.84QKK29 pKa = 8.69TSCGLTVGAVGRR41 pKa = 11.84PCPRR45 pKa = 11.84PRR47 pKa = 11.84SPRR50 pKa = 11.84RR51 pKa = 11.84VMPDD55 pKa = 3.02QIATGRR61 pKa = 11.84KK62 pKa = 9.07SYY64 pKa = 10.83NCPFRR69 pKa = 11.84FRR71 pKa = 11.84EE72 pKa = 4.68FKK74 pKa = 10.57NQPPPSLKK82 pKa = 9.53FAKK85 pKa = 9.52FVKK88 pKa = 10.27FVVPP92 pKa = 4.5

Molecular weight: 10.64 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

2824

0

2824

942703

38

2547

333.8

37.66

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

7.225 ± 0.042

1.225 ± 0.018

5.876 ± 0.032

5.93 ± 0.041

4.391 ± 0.027

6.969 ± 0.042

2.115 ± 0.023

6.388 ± 0.046

6.533 ± 0.039

8.67 ± 0.042

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

3.037 ± 0.022

5.204 ± 0.038

3.672 ± 0.022

3.692 ± 0.028

5.046 ± 0.037

6.013 ± 0.035

5.783 ± 0.032

6.619 ± 0.037

1.302 ± 0.017

4.308 ± 0.036
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski